View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2108_high_3 (Length: 475)
Name: NF2108_high_3
Description: NF2108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2108_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 7e-87; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 274 - 464
Target Start/End: Original strand, 7302331 - 7302521
Alignment:
| Q |
274 |
caccctccggtcaggtatataagcnnnnnnnncatctttcacggtgattaagaaatactgttaagtgtaattaattttctagaatttgtgtaaaacataa |
373 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7302331 |
caccctccggtcagatatataagcaaaaaaaacatctttcacggtgattaagaaatactgttaagtgtaattaattttctagaatttgtgtaaaacataa |
7302430 |
T |
|
| Q |
374 |
gtcaaatggactatattgcccttttcttaaaattaacactttgcaggagcttgtcattacaccttccagtttcccaccacacgtgagaata |
464 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7302431 |
gtcaaatggactatattgcccttttcttaaaattaacactttgcaggagcttgtcattacaccttccagtttcccaccacacgtgagaata |
7302521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 274 - 464
Target Start/End: Complemental strand, 16445850 - 16445660
Alignment:
| Q |
274 |
caccctccggtcaggtatataagcnnnnnnnncatctttcacggtgattaagaaatactgttaagtgtaattaattttctagaatttgtgtaaaacataa |
373 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16445850 |
caccctccggtcagatatataagcaaaaaaaacatctttcacggtgattaagaaatactgttaagtgtaattaattttctagaatttgtgtaaaacataa |
16445751 |
T |
|
| Q |
374 |
gtcaaatggactatattgcccttttcttaaaattaacactttgcaggagcttgtcattacaccttccagtttcccaccacacgtgagaata |
464 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16445750 |
gtcaaatggactatattgcccttttcttaaaattaacactttgcaggagcttgtcattacaccttccagtttcccaccacacgtgagaata |
16445660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 309 - 409
Target Start/End: Complemental strand, 40289155 - 40289055
Alignment:
| Q |
309 |
ctttcacggtgattaagaaatactgttaagtgtaattaattttctagaatttgtgtaaaacataagtcaaatggactatattgcccttttcttaaaatta |
408 |
Q |
| |
|
||||||||||||||||||||| | |||||||||| || |||||||| | ||||| |||||||||||| |||| |||||||||||| |||||||||||||| |
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|
| T |
40289155 |
ctttcacggtgattaagaaatgcagttaagtgtagttgattttctaaattttgtataaaacataagttaaattgactatattgccattttcttaaaatta |
40289056 |
T |
|
| Q |
409 |
a |
409 |
Q |
| |
|
| |
|
|
| T |
40289055 |
a |
40289055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 7e-87; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 274 - 464
Target Start/End: Original strand, 6122509 - 6122699
Alignment:
| Q |
274 |
caccctccggtcaggtatataagcnnnnnnnncatctttcacggtgattaagaaatactgttaagtgtaattaattttctagaatttgtgtaaaacataa |
373 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6122509 |
caccctccggtcagatatataagcaaaaaaaacatctttcacggtgattaagaaatactgttaagtgtaattaattttctagaatttgtgtaaaacataa |
6122608 |
T |
|
| Q |
374 |
gtcaaatggactatattgcccttttcttaaaattaacactttgcaggagcttgtcattacaccttccagtttcccaccacacgtgagaata |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6122609 |
gtcaaatggactatattgcccttttcttaaaattaacactttgcaggagcttgtcattacaccttccagtttcccaccacacgtgagaata |
6122699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 38 - 263
Target Start/End: Original strand, 45078523 - 45078747
Alignment:
| Q |
38 |
gacggttccttgagagtggcgccgtagtcgcttctttgaacgcgtgcggtttgccatggtgtcatcgtctccacccatgcctacagcctttagattagtg |
137 |
Q |
| |
|
|||| |||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||| |||||||| |
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|
| T |
45078523 |
gacgattccttgagagtggcgtcgtagacgcttctttgaacgcgtgcggtttgcaatggtgtcatcgtctccacccatgcttgcagcctttcgattagtg |
45078622 |
T |
|
| Q |
138 |
tgtttgctttagcgatgaagttaacaaactcactttccgaaatcgcatttctgctgaagctttatgattggagcttttaaaattttcggtgaaagctccc |
237 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| ||||||| |||||||| |||| ||| ||||||||||||||||||| |||||||||| || |
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|
| T |
45078623 |
tgtttgctttagcgatgaagttaccaaactcattttccaaaatcgcgtttctgctcaagc-ttagaattggagcttttaaaatttgcggtgaaagcctcc |
45078721 |
T |
|
| Q |
238 |
tccagtcacgatttcaagtcatgcaa |
263 |
Q |
| |
|
|||||||||| ||||||||||||||| |
|
|
| T |
45078722 |
tccagtcacgctttcaagtcatgcaa |
45078747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 38 - 262
Target Start/End: Original strand, 45089843 - 45090066
Alignment:
| Q |
38 |
gacggttccttgagagtggcgccgtagtcgcttctttgaacgcgtgcggtttgccatggtgtcatcgtctccacccatgcctacagcctttagattagtg |
137 |
Q |
| |
|
|||| |||||||||||||| | ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||| || |
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|
| T |
45089843 |
gacgattccttgagagtggtgtcgtagacgcttctttgaacgcgtgcggtttgcaatggtgtcatcgtctccacccatgcctgcagcctttcgattaatg |
45089942 |
T |
|
| Q |
138 |
tgtttgctttagcgatgaagttaacaaactcactttccgaaatcgcatttctgctgaagctttatgattggagcttttaaaattttcggtgaaagctccc |
237 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||| |||| ||||||| || | ||||||||||||||||||||||| |||||| ||| |
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|
| T |
45089943 |
tgtttgctttagctatgaagttaccaaactcactttccgaaatcgcgtttccactgaagc-ttgtaattggagcttttaaaattttcggagaaagccccc |
45090041 |
T |
|
| Q |
238 |
tccagtcacgatttcaagtcatgca |
262 |
Q |
| |
|
||| ||||||||||||||||||||| |
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|
| T |
45090042 |
tccggtcacgatttcaagtcatgca |
45090066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 142 - 263
Target Start/End: Original strand, 45077664 - 45077784
Alignment:
| Q |
142 |
tgctttagcgatgaagttaacaaactcactttccgaaatcgcatttctgctgaagctttatgattggagcttttaaaattttcggtgaaagctccctcca |
241 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||| |||| ||| |||||| | ||||||||||||||||||| |||||||||| |||| || |
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|
| T |
45077664 |
tgctttagcgatgaagttaccaatctcactttccgaaatcgcgtttccgcttaagctt-agaattggagcttttaaaatttgcggtgaaagcccccttca |
45077762 |
T |
|
| Q |
242 |
gtcacgatttcaagtcatgcaa |
263 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
45077763 |
gtcacgatttcaagtcatgcaa |
45077784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 50503658 - 50503594
Alignment:
| Q |
135 |
gtgtgtttgctttagcgatgaagttaacaaactcactttccgaaatcgcatttctgctgaagctt |
199 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||| ||| |||| ||| |||||| |||||||| |
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|
| T |
50503658 |
gtgtgtttgctttagcggtgaagttaccaaactcacgttcagaaaccgcgtttctgatgaagctt |
50503594 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 309 - 409
Target Start/End: Complemental strand, 25998225 - 25998125
Alignment:
| Q |
309 |
ctttcacggtgattaagaaatactgttaagtgtaattaattttctagaatttgtgtaaaacataagtcaaatggactatattgcccttttcttaaaatta |
408 |
Q |
| |
|
||||||||||||||||||||| | |||||||||| || |||||||| | ||||| |||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
25998225 |
ctttcacggtgattaagaaatgcagttaagtgtagttgattttctaaattttgtataaaacataagttaaattgactatattgcccttttcttaaaatta |
25998126 |
T |
|
| Q |
409 |
a |
409 |
Q |
| |
|
| |
|
|
| T |
25998125 |
a |
25998125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 309 - 409
Target Start/End: Original strand, 4201179 - 4201279
Alignment:
| Q |
309 |
ctttcacggtgattaagaaatactgttaagtgtaattaattttctagaatttgtgtaaaacataagtcaaatggactatattgcccttttcttaaaatta |
408 |
Q |
| |
|
||||||||||||||||||||| | |||||||||| || |||| ||| | |||||||||||||||| | |||| ||||||||||||||||||||||||||| |
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|
| T |
4201179 |
ctttcacggtgattaagaaatgcagttaagtgtagttgatttcctaaattttgtgtaaaacataaattaaattgactatattgcccttttcttaaaatta |
4201278 |
T |
|
| Q |
409 |
a |
409 |
Q |
| |
|
| |
|
|
| T |
4201279 |
a |
4201279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 309 - 409
Target Start/End: Original strand, 24740363 - 24740463
Alignment:
| Q |
309 |
ctttcacggtgattaagaaatactgttaagtgtaattaattttctagaatttgtgtaaaacataagtcaaatggactatattgcccttttcttaaaatta |
408 |
Q |
| |
|
|||| |||||||||||||||| | |||||||||| || |||||||| | ||||| |||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
24740363 |
cttttacggtgattaagaaatgcagttaagtgtagttgattttctaaattttgtataaaacataagttaaattgactatattgcccttttcttaaaatta |
24740462 |
T |
|
| Q |
409 |
a |
409 |
Q |
| |
|
| |
|
|
| T |
24740463 |
a |
24740463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 309 - 409
Target Start/End: Complemental strand, 6301095 - 6300995
Alignment:
| Q |
309 |
ctttcacggtgattaagaaatactgttaagtgtaattaattttctagaatttgtgtaaaacataagtcaaatggactatattgcccttttcttaaaatta |
408 |
Q |
| |
|
||||||||||||||||||||| | ||||||| || || |||||||| | ||||| |||||||||||| |||| ||||||||||||||| ||||||||||| |
|
|
| T |
6301095 |
ctttcacggtgattaagaaatgcagttaagtatagttgattttctaaattttgtataaaacataagttaaattgactatattgcccttctcttaaaatta |
6300996 |
T |
|
| Q |
409 |
a |
409 |
Q |
| |
|
| |
|
|
| T |
6300995 |
a |
6300995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 309 - 408
Target Start/End: Complemental strand, 10371252 - 10371153
Alignment:
| Q |
309 |
ctttcacggtgattaagaaatactgttaagtgtaattaattttctagaatttgtgtaaaacataagtcaaatggactatattgcccttttcttaaaatta |
408 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||| || || ||||||||||||| ||| ||| ||||||||||||||||||||||||||| |
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|
| T |
10371252 |
ctttcacggtgattaagaaatgtagttaagtgtagttaattttttaaaacttgtgtaaaacattagttgaattgactatattgcccttttcttaaaatta |
10371153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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