View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2108_high_6 (Length: 398)
Name: NF2108_high_6
Description: NF2108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2108_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 20361818 - 20362188
Alignment:
| Q |
1 |
acctgatctaacaactttccagactcatgttgttcaagatcctggtgttgatgttgttgatgttgatgtcaaaaagtttctcattaaaacctaatacacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20361818 |
acctgatctaacaactttccagactcatgttgttcaagatcctggtgttgatattgttgatgttgatgtcaaaaagtttctcattaaaacctaatacacc |
20361917 |
T |
|
| Q |
101 |
ccgccatggttatggttatggttatggttagtaatcataacaacatacccatcttttcattttaccgtacatatactttgctgctgctgcattatatgta |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20361918 |
ccgccatgg------ttatggttatggttagtaatcataacaacatacccatcttttcattttaccgtacatatactttgctgctgctgcattatatgta |
20362011 |
T |
|
| Q |
201 |
atcacaccggtatgcccctaacccttgattatgtattccttttgcaggaatctacctgccatgaatatgcttgttttggttgcgctggaaagacttgttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
20362012 |
atcacaccggtatgcccctaacccttgattatgtattccttttgcaggaatctacctgccatggatatgcttgttttggttgcgctggaaagacttgttt |
20362111 |
T |
|
| Q |
301 |
gtaggtgtagttaattaaataaatatgatgggtgtttatgactttatgtaccatggtatttctgtgtaattgggatg |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20362112 |
gtaggtgtagttaattaaataaatatgatgggtgtttatgactttatgtaccatggtatttctgtgtaattgggatg |
20362188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 118 - 263
Target Start/End: Original strand, 21549737 - 21549882
Alignment:
| Q |
118 |
atggttatggttagtaatcataacaacatacccatcttttcattttaccgtacatatactttgctgctgctgcattatatgtaatcacaccggtatgccc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
21549737 |
atggttatggttagtaatcataacaacatatccatcttttcattttaccatacatatacgttgctgctgctgcattatatttaatcacatcggtatgccc |
21549836 |
T |
|
| Q |
218 |
ctaacccttgattatgtattccttttgcaggaatctacctgccatg |
263 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21549837 |
ctaacccttaattatgcattccttttgcaggaatctacctgccatg |
21549882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University