View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2108_high_9 (Length: 293)
Name: NF2108_high_9
Description: NF2108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2108_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 15688659 - 15688921
Alignment:
| Q |
19 |
ggtcaaaccagcatctacaagtccttttacaccttcttttgattcatcaagaagctttaactctttgtgtctatcataaacatgttcatggtcttgtttg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15688659 |
ggtcaaaccagcatctacaagtccttttacaccttcttttgattcatcaagcagctttaactctttctgtctatcataaacatgttcatggtcttgtttg |
15688758 |
T |
|
| Q |
119 |
atttcttctaggtttgtgttcaccatgtttgagtttctttctttggcaacaactcaacagatgagaaattgtctttggctttttgggatattgtacagtg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15688759 |
atttcttctaggtttgtgttcaccatgtttgagtttctttctttgacaacaactcaacagaggagatattgtctttggctttttgggatattgtacagtg |
15688858 |
T |
|
| Q |
219 |
atgtctttgtctctccaattttaaaataagccaaaaaagaatgatctaaactgtaacaagaat |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15688859 |
atgtctttgtctctccaattttaaaataagccaaaaaagaatgatctaaactgtaacaggaat |
15688921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 15684363 - 15684570
Alignment:
| Q |
19 |
ggtcaaaccagcatctacaagtccttttacaccttcttttgattcatcaagaagctttaactctttgtgtctatcataaacatgttcatggtcttgtttg |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15684363 |
ggtcaaaccagcatcaacaagtccttttacaccttcttttgattcatcaagaagcattaactctttgtgtctatcataaacatgttcacggtcttgtttg |
15684462 |
T |
|
| Q |
119 |
atttcttctaggtttgtgttcaccatgtttgagtttctttctttggcaacaactcaacagatgaga-aattgtc-tttggctttttgggatattgtacag |
216 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||| | |||||| |||||||||||| | ||||| |||| ||||||||| |||||||| |
|
|
| T |
15684463 |
atttcttctagatttgtgttccccatgtttgagtttctttcttggacaacaaaacaacagatgagatatttgtcttttgtttttttgggaaattgtacaa |
15684562 |
T |
|
| Q |
217 |
tgatgtct |
224 |
Q |
| |
|
|||||||| |
|
|
| T |
15684563 |
tgatgtct |
15684570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 15682319 - 15682445
Alignment:
| Q |
19 |
ggtcaaaccagcatctacaagtccttttacaccttcttttgattcatcaagaagctttaactctttgtgtctatcataaacatgttcatggtcttgtttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
15682319 |
ggtcaaaccagcatctacaagtccttttacaccttcttttgattcatcaagaagctttaactctttctgtctatcataaacatgttcatgttcttgtttg |
15682418 |
T |
|
| Q |
119 |
atttcttctaggtttgtgttcaccatg |
145 |
Q |
| |
|
||||||||||| ||||||||||||||| |
|
|
| T |
15682419 |
atttcttctagatttgtgttcaccatg |
15682445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University