View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2108_low_1 (Length: 874)
Name: NF2108_low_1
Description: NF2108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2108_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-148; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 424 - 855
Target Start/End: Complemental strand, 42741268 - 42740853
Alignment:
| Q |
424 |
gtaccccactttcatttcatcttgttataattatcaatttacaannnnnnnnnn-ataaactcggaagatataatgttgacagtatgatatttttatctc |
522 |
Q |
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| T |
42741268 |
gtaccccactttcatttcattttgttataattatcaatttacaatttttttttttataaacccggaagatatgatgttgacagtatgatatttttatctc |
42741169 |
T |
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| Q |
523 |
atacgttagaagtactactaattactt-attgaacaaaatgaaatgaactgaaaatgtgaagttgatattttccttttgtctataaatatcttaaagagt |
621 |
Q |
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| T |
42741168 |
atacgctagaagtactactaattactttattgaataaaattaaatgaactgaaaatg--aagtttatattttccttttatttataaatatcttaaagcgt |
42741071 |
T |
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| Q |
622 |
ttggaagtgtgtgtgtttcatatttgtctgtttgtgcgaaagaatatttgactatgactttgaattttttgggataaattcatttattcagatgtgcgag |
721 |
Q |
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| T |
42741070 |
ttggaa--------------tatttgtctgtttgtgcgaaagaataattgactatgactttgaattttggggga--aattcatttattcagatgtgcgag |
42740987 |
T |
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| Q |
722 |
gctattgacagctcagtgacgggaaagaatacattagagaagttgtatgatgctgcaagtatatactacaactatagtggtacctctaagtgtttcgatt |
821 |
Q |
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| T |
42740986 |
gctattgacagctcagtgacgggaaagaatacattagagaagttgtatgatgctgcaagtatatactacaactatagtggtacctctaagtgtttcgatt |
42740887 |
T |
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| Q |
822 |
taaatgatcattctgatcctcatgatcttggagg |
855 |
Q |
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| T |
42740886 |
taaatgatcattctgatcctcatgatcttggagg |
42740853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 269 - 358
Target Start/End: Complemental strand, 42741424 - 42741335
Alignment:
| Q |
269 |
aagaaatttttacaaagttatgtacacgtactcttatatgaaacaatgtttatatattttcaaatacgaaaaaatctcctgaaccgtacc |
358 |
Q |
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| T |
42741424 |
aagaaatttttacaaagttctgtacacgtactcttatatgaaacaatatttatatattttcaaatacgaaaaaatatcctgaaccatacc |
42741335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 42741678 - 42741644
Alignment:
| Q |
15 |
caaagggtaaagaaaggaagattgtagcaaaaata |
49 |
Q |
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| T |
42741678 |
caaagggtaaagaaaggaagattgtagcaaaaata |
42741644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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