View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2108_low_10 (Length: 314)
Name: NF2108_low_10
Description: NF2108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2108_low_10 |
 | |
|
| [»] scaffold0182 (1 HSPs) |
| | |
|
| [»] scaffold0430 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 10 - 299
Target Start/End: Original strand, 21749258 - 21749547
Alignment:
| Q |
10 |
aaaaatatgttagatttcacaagattaggattttggaatttttgtattggaactagatagtttgataggttaatagacaaataatgaattaaataatgta |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21749258 |
aaaattatgttagatttcacaagattaggattttggaatttttgtattggaactggatagtttgataggttaatagacaaacaatgaattaaataatgta |
21749357 |
T |
|
| Q |
110 |
tggatgttttgtattgtattgtttgtcaaccgagattcttttaattaattctttatgcacttgagttattttaaactgttggttatgctgaaaactgaat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21749358 |
tggatgttttgtattgtattgtttgtcaaccgagattcttttgattaattctttatgcacttgagttattttaaactgttggctatgctgaaaactgaat |
21749457 |
T |
|
| Q |
210 |
gatacttgattaatttttctttccatatgacacatgagaatatgctggaggtagatctattgagtaaacgttggattgcttgtcatgagt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21749458 |
gatacttgattaatttttctttccatatgacacatgagaatatgctggatgtagatctattgagtaaacgttggattgcttgtcatgagt |
21749547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 15584 - 15719
Alignment:
| Q |
164 |
atgcacttgagttattttaaactgttggttatgctgaaaactgaatgatacttgattaatttttctttccatatgacacatgagaatatgctggaggtag |
263 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
15584 |
atgcacttgagttattttaaactgttggctatgctgaaaattgaatgatacttgattaatttttctttccatatgacacatgagaatatgctcggggtag |
15683 |
T |
|
| Q |
264 |
atctattgagtaaacgttggattgcttgtcatgagt |
299 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15684 |
atctattgagtaaacgttggattgattgtcatgagt |
15719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0430 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 11141 - 10844
Alignment:
| Q |
18 |
gttagatttcacaagattaggattttggaatttttgtattggaactagatagtttgataggttaatagacaaataatgaattaaataatgtatggatgtt |
117 |
Q |
| |
|
||||||||||||||||| ||| | ||||| |||||||||||||||| ||||||||| ||||||||||||||| ||||||||| ||||||| ||||||| |
|
|
| T |
11141 |
gttagatttcacaagatcaggctgttggattttttgtattggaactgtatagtttgacaggttaatagacaaacaatgaattacataatgtctggatgta |
11042 |
T |
|
| Q |
118 |
ttgtattgtattgtttgtcaaccgagattcttttaatt-------aattctttatgcac-----------ttgagttattttaaactgttggttatgctg |
199 |
Q |
| |
|
|| ||||||||||||||||||| || ||||| || ||| ||| | ||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
11041 |
ttctattgtattgtttgtcaactgatattctcttgattttaagtggattttatatgcactttagtatcctttgagttattttaaactgttggctatgctg |
10942 |
T |
|
| Q |
200 |
aaaactgaatgatacttgattaatttttctttccatatgacacatgagaatatgctggaggtagatctattgagtaaacgttggattgcttgtcatgagt |
299 |
Q |
| |
|
||| |||||||||||||||| |||||| ||||||| ||||||||| ||||| || |||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
10941 |
gaaattgaatgatacttgattcgtttttcattccatacgacacatgaaaatattctagaggtagatctattgagtaa--tttggatggcttgtcatgagt |
10844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 3315397 - 3315671
Alignment:
| Q |
18 |
gttagatttcacaagattaggattttggaatttttgtattggaactagatagtttgataggttaatagacaaataatgaattaaataatgtatggatgtt |
117 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||| ||||| | |||||| |
|
|
| T |
3315397 |
gttagatttcacaagattaggctgttggaatttttgtattggaactggatagtttgacaggttaatagacaaacaatgaattacataatatccggatgt- |
3315495 |
T |
|
| Q |
118 |
ttgtattgtattgtttgtcaaccgagattctttt--------aattaattctttatgcactt-------------gagttattttaaactgttggttatg |
196 |
Q |
| |
|
|||||||||||||||||| |||||||||| | | ||||| ||||||||| |||||||||||||||||||| |||| |
|
|
| T |
3315496 |
----attgtattgtttgtcaacttagattctttttgattttaagtggattctatatgcactttagtatcctttttgagttattttaaactgttggctatg |
3315591 |
T |
|
| Q |
197 |
ctgaaaactgaatgatacttgattaatttttctttccatatgacacatgagaatatgctggaggtagatctattgagtaa |
276 |
Q |
| |
|
||| ||| ||||||||||||||||||||||| ||||||| |||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
3315592 |
ctggaaatagaatgatacttgattaatttttcattccatacgacacaggagaatatgctcgaggtagatctattgagtaa |
3315671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 27354990 - 27354866
Alignment:
| Q |
27 |
cacaagattaggattttggaatttttgtattggaactagatagtttgataggttaatagacaaataatgaattaaataatgtatggatgttttgtattgt |
126 |
Q |
| |
|
|||||||||||| | ||| |||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||| || ||||||||||||| |
|
|
| T |
27354990 |
cacaagattaggctgttgaaatttttgtattggaactggatagtttgacaggttaatagacaaacaatgaattaaataatgtttgagtgttttgtattgt |
27354891 |
T |
|
| Q |
127 |
attgtttgtcaaccgagattctttt |
151 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
27354890 |
attgtttgtcaactgagattctttt |
27354866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 27354824 - 27354747
Alignment:
| Q |
222 |
atttttctttccatatgacacatgagaatatgctggaggtagatctattgagtaaacgttggattgcttgtcatgagt |
299 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27354824 |
atttttcattccatacgacacatgagaatatgctggaggtagatctattgagtaaacgttggatcgcttgtcatgagt |
27354747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University