View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2108_low_15 (Length: 250)
Name: NF2108_low_15
Description: NF2108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2108_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 5273556 - 5273778
Alignment:
| Q |
14 |
gattctcagttctcattcgtcttctcaaaacaactcagttaataaaccaactcaactcacaactagttannnnnnnnnnnnnnnnnnnngattctagcag |
113 |
Q |
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| T |
5273556 |
gattctcagttctcattcgtcttctcaaaacaactcagttaataaaccaactcaactcacaactagttacatcatcatcatca------gattctagcag |
5273649 |
T |
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| Q |
114 |
tggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgtta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5273650 |
tggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgtta |
5273749 |
T |
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| Q |
214 |
caattccatacactttcctcattcatctc |
242 |
Q |
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|||||||| |||||||||||||||||||| |
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| T |
5273750 |
caattccacacactttcctcattcatctc |
5273778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 36151143 - 36151243
Alignment:
| Q |
115 |
ggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttac |
214 |
Q |
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| T |
36151143 |
ggtgggttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttac |
36151242 |
T |
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| Q |
215 |
a |
215 |
Q |
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| T |
36151243 |
a |
36151243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 36154535 - 36154629
Alignment:
| Q |
121 |
ttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttaca |
215 |
Q |
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|||||| |||||||||||||||| ||| || || ||||||||| |||| ||||| || ||||||| ||| ||||| ||||| ||||| ||||| |
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| T |
36154535 |
ttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttaca |
36154629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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