View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2108_low_2 (Length: 795)

Name: NF2108_low_2
Description: NF2108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2108_low_2
NF2108_low_2
[»] chr3 (4 HSPs)
chr3 (18-780)||(25901044-25901807)
chr3 (18-777)||(25915062-25915822)
chr3 (276-478)||(36339960-36340162)
chr3 (250-337)||(12734787-12734874)
[»] chr4 (25 HSPs)
chr4 (18-669)||(10571041-10571693)
chr4 (18-669)||(10553311-10553963)
chr4 (249-626)||(10460318-10460699)
chr4 (247-470)||(8443448-8443671)
chr4 (247-468)||(10482036-10482257)
chr4 (253-481)||(6388082-6388310)
chr4 (247-468)||(10467898-10468118)
chr4 (247-480)||(8447648-8447881)
chr4 (254-481)||(6392663-6392893)
chr4 (267-470)||(10464119-10464325)
chr4 (247-478)||(10493520-10493753)
chr4 (251-325)||(837774-837848)
chr4 (247-324)||(53774839-53774916)
chr4 (267-470)||(10475057-10475260)
chr4 (253-325)||(6372443-6372515)
chr4 (251-308)||(829595-829652)
chr4 (592-662)||(10481844-10481914)
chr4 (691-748)||(10553997-10554054)
chr4 (251-324)||(11970980-11971053)
chr4 (700-748)||(10571736-10571784)
chr4 (18-61)||(10482452-10482495)
chr4 (18-67)||(838005-838054)
chr4 (592-629)||(10467739-10467776)
chr4 (18-63)||(10475482-10475527)
chr4 (271-324)||(35767017-35767070)
[»] chr2 (7 HSPs)
chr2 (252-476)||(25376921-25377145)
chr2 (255-337)||(18913559-18913641)
chr2 (251-334)||(20975547-20975630)
chr2 (255-325)||(18908811-18908881)
chr2 (255-325)||(18920767-18920837)
chr2 (253-341)||(14514882-14514970)
chr2 (276-354)||(20980573-20980651)
[»] chr1 (2 HSPs)
chr1 (253-464)||(50645485-50645696)
chr1 (253-323)||(4570927-4570997)
[»] chr7 (22 HSPs)
chr7 (269-478)||(26256620-26256829)
chr7 (245-354)||(22063611-22063720)
chr7 (245-354)||(22100462-22100571)
chr7 (250-338)||(19357895-19357983)
chr7 (335-427)||(19597737-19597828)
chr7 (251-322)||(660845-660916)
chr7 (247-354)||(22070080-22070187)
chr7 (247-354)||(22080837-22080944)
chr7 (269-335)||(22028616-22028682)
chr7 (247-324)||(14076677-14076754)
chr7 (247-324)||(14386705-14386782)
chr7 (269-354)||(15571911-15571996)
chr7 (253-341)||(1985955-1986043)
chr7 (273-389)||(19637237-19637353)
chr7 (269-366)||(16846480-16846577)
chr7 (18-63)||(19645454-19645499)
chr7 (253-341)||(20058057-20058145)
chr7 (275-354)||(9807793-9807872)
chr7 (391-478)||(26237459-26237546)
chr7 (271-321)||(24031257-24031307)
chr7 (269-366)||(16839397-16839494)
chr7 (276-321)||(23999478-23999523)
[»] chr6 (7 HSPs)
chr6 (276-478)||(19746717-19746919)
chr6 (276-479)||(33576014-33576217)
chr6 (251-323)||(20770650-20770722)
chr6 (255-325)||(6954521-6954591)
chr6 (253-366)||(6947880-6947993)
chr6 (253-325)||(6921350-6921422)
chr6 (247-308)||(17369679-17369740)
[»] scaffold0867 (1 HSPs)
scaffold0867 (245-354)||(4661-4770)
[»] scaffold0464 (1 HSPs)
scaffold0464 (250-337)||(8047-8134)
[»] chr8 (2 HSPs)
chr8 (247-354)||(27618460-27618567)
chr8 (533-566)||(42846838-42846871)
[»] chr5 (4 HSPs)
chr5 (391-462)||(23086643-23086714)
chr5 (266-321)||(23086784-23086839)
chr5 (247-317)||(18964824-18964894)
chr5 (20-94)||(37935314-37935388)


Alignment Details
Target: chr3 (Bit Score: 748; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 748; E-Value: 0
Query Start/End: Original strand, 18 - 780
Target Start/End: Original strand, 25901044 - 25901807
Alignment:
Q  18 aaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtactttattagtaatttgaattggctcgcctctattttc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25901044 aaactcactttcaactagttgaaaccaaactttcaacgtaatccttggcccacaaccactgtactttattagtaatttgaattggctcgcctctattttc 25901143  T
Q  118 tctgcatttatagataaatgctgcgtcgatttgatcatttgctaatatcaatgcatcacctttcttagaaaggtacaatggcaataactccatcgtttca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25901144 tctgcatttatagataaatgctgcgtcgatttgatcatttgctaatatcaatgcatcacctttcttagaaaggtacaatggcaataactccatcgtttca 25901243  T
Q  218 aatttcaataaatattggcttgaacaaatattctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25901244 aatttcaataaatattggcttgaacaaatattctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataa 25901343  T
Q  318 caaaatggcttcccttgaaatcatgaccaaaacaaagggagtccatcaaaaccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggtag 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25901344 caaaatggcttcccttgaaatcatgaccaaaacaaagggagtccatcaaaaccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggtag 25901443  T
Q  418 caacaactgagtgtatgactcagtggacagatcaagcgaaacaatcacatattgctcaacagt-atcttactaacattatcaaattcataatctgaatag 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25901444 caacaactgagtgtatgactcagtggacagatcaagcgaaacaatcacatattgctcaacagtaatcttactaacattatcaaattcataatctgaatag 25901543  T
Q  517 aagtaattgtgaagtgccaaccagttaatagtaccactcaagtaaacaccttggttcttatcatgatcaaaccaataaagtggaagcacagggaaacatt 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25901544 aagtaattgtgaagtgccaaccagttaatagtaccactcaagtaaacaccttggttcttatcatgatcaaaccaataaagtggaagcacagggaaacatt 25901643  T
Q  617 gaatgtttctccatgaatcatcctccatgctgagaactttcaccacacttgttccatcaacactctccactatgaacgctagtaccttataagttttact 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25901644 gaatgtttctccatgaatcatcctccatgctgagaactttcaccacacttgttccatcaacactctccactatgaacgctagtaccttataagttttact 25901743  T
Q  717 caaaatatcataaccaaaagagaacttaaaatctctagacaaagtgattaaaatgtttctagat 780  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25901744 caaaatatcataaccaaaagagaacttaaaatctctagacaaagtgattaaaatgtttctagat 25901807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 18 - 777
Target Start/End: Original strand, 25915062 - 25915822
Alignment:
Q  18 aaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtactttattagtaatttgaattggctcgcctctattttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915062 aaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtactttattagtaatttgaattggctcgcctctattttc 25915161  T
Q  118 tctgcatttatagataaatgctgcgtcgatttgatcatttgctaatatcaatgcatcacctttcttagaaaggtacaatggcaataactccatcgtttca 217  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25915162 tctgcatttatagataaatgctgtgtcgatttgatcatttgctaatatcaatgcatcacctttcttagaaaggtacaatggcaagaactccatcgtttca 25915261  T
Q  218 aatttcaataaatattggcttgaacaaatattctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataa 317  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915262 aatttcaataaagattggcttgaacaaaaattctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataa 25915361  T
Q  318 caaaatggcttcccttgaaatcatgaccaaaacaaagggagtccatcaaaaccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggtag 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25915362 caaaatggcttcccttgaaatcatgaccaaaacaaagggagtccatcaaaaccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggcag 25915461  T
Q  418 caacaactgagtgtatgactcagtggacagatcaagcgaaacaatcacatattgctcaacagt-atcttactaacattatcaaattcataatctgaatag 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||    
T  25915462 caacaactgagtgtatgactcagtggacagatcaagcgaaacaatcacatattgctcaacagtaatcttactaacattatcaaattcatagtcagaatag 25915561  T
Q  517 aagtaattgtgaagtgccaaccagttaatagtaccactcaagtaaacaccttggttcttatcatgatcaaaccaataaagtggaagcacagggaaacatt 616  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||| |||||||||||||| ||||    
T  25915562 aagtaattgcgaagtgccaaccagttaatagtaccactcaagtaaacaccttggctcttatcacgatgaaaccaataaaggggaagcacagggaagcatt 25915661  T
Q  617 gaatgtttctccatgaatcatcctccatgctgagaactttcaccacacttgttccatcaacactctccactatgaacgctagtaccttataagttttact 716  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  25915662 gaatgtttctccatgaatcatcccccatgctgagaactttcaccacacttgttccataaacactctccactatgaacgctattaccttataagttttact 25915761  T
Q  717 caaaatatcataaccaaaagagaacttaaaatctctagacaaagtgattaaaatgtttcta 777  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915762 caaagtatcataaccaaaagagaacttaaaatctctagacaaagtgattaaaatgtttcta 25915822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 276 - 478
Target Start/End: Complemental strand, 36340162 - 36339960
Alignment:
Q  276 tccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgaccaaaacaaagggagtccatcaaaaccacaat 375  Q
    ||||||||||||||  || ||| |||||||| | |||||| ||||| |   ||| ||||||||| ||   ||| |||||| ||||||||| ||||  ||     
T  36340162 tccaagactcttgagatccaaactccttcatctgccatatcacaaattcagttctcttgaaatcgtgtgaaaagcaaaggcagtccatcagaacccgaag 36340063  T
Q  376 tgttggctgaacacgtggcacctcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggacagatcaagcgaaacaatcacatattgctca 475  Q
     | ||||| ||| | ||||||||| | ||||||   ||| ||||| |||||  |||||| ||| || || ||||||||||||||||||||  ||||||||    
T  36340062 agatggctcaacgcatggcacctccttaaaacctgcaggaagcaaaaactgcctgtatgtctccgtcgaaagatcaagcgaaacaatcaccaattgctca 36339963  T
Q  476 aca 478  Q
    |||    
T  36339962 aca 36339960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 337
Target Start/End: Original strand, 12734787 - 12734874
Alignment:
Q  250 ctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaa 337  Q
    |||| |||||||||| |  |||||||||||||| ||||||||||  || |||  |||  |||||| |||||||||| |||||||||||    
T  12734787 ctgaaaactaattttgagaaattgaatccaagaatcttgaactccgaattccaacatcatccataaaacaaaatgggttcccttgaaa 12734874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 317; Significance: 1e-178; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 18 - 669
Target Start/End: Original strand, 10571041 - 10571693
Alignment:
Q  18 aaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtactttattagtaatttgaattggctcgcctctattttc 117  Q
    ||||||||||||| | ||||| |||||||||||||||||||||||| ||||| ||||||| || |||||||||||||  |||| ||||||||||||| ||    
T  10571041 aaactcactttcatcgagttggaaccaaactttcaacgtaatccttggcccataaccaccatattttattagtaattctaatttgctcgcctctattgtc 10571140  T
Q  118 tctgcatttatagataaatgctgcgtcgatttgatcatttgctaatatcaatgcatcacctttcttagaaaggtacaatggcaataactccatcgtttca 217  Q
    |||||| ||||||||||||| || |||| ||| ||||||||| ||||||||||  ||  | |||||||||||||||||||||||||||||||||||||||    
T  10571141 tctgcaattatagataaatgttgtgtcgttttcatcatttgcaaatatcaatgtttccgcattcttagaaaggtacaatggcaataactccatcgtttca 10571240  T
Q  218 aatttcaataaatattggcttgaacaaatattctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataa 317  Q
    |||||||||||||||| |||||||   | ||||| |||||||||||| ||||| |||||||||||||||||||||| ||||||  |||||||||||| ||    
T  10571241 aatttcaataaatattcgcttgaatggaaattctcataactaattttaaacaactgaatccaagactcttgaactccaaaatctgtcattttccataaaa 10571340  T
Q  318 caaaatggcttcccttgaaatcatgaccaaaacaaagggagtccatcaaaaccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggtag 417  Q
    ||| ||| ||||||||||||||||||| ||| |||||  |||  || ||||||||||  ||||| |||||||  | ||||||||||||||||||||| ||    
T  10571341 caagatgacttcccttgaaatcatgacaaaagcaaagacagttgattaaaaccacaagcgttggttgaacacaagacacctcgtcaaaaccccgaggaag 10571440  T
Q  418 caacaactgagtgtatgactcagtggacagatcaagcgaaacaatcacatattgctcaacagt-atcttactaacattatcaaattcataatctgaatag 516  Q
    |||||| | ||||||||||||||| || |||||||| |||||||||||||||||||||||||| ||  ||||||||||| ||| ||||||||| ||||||    
T  10571441 caacaattcagtgtatgactcagttgagagatcaagtgaaacaatcacatattgctcaacagtaatactactaacattaccaatttcataatcagaatag 10571540  T
Q  517 aagtaattgtgaagtgccaaccagttaatagtaccactcaagtaaacaccttggttcttatcatgatcaaaccaataaagtggaagcacagggaaacatt 616  Q
    ||||||| | |||| | || ||||||||| ||||||||||| || ||||| | |||||| ||| | | |||||| |||||||||||||| ||||||||||    
T  10571541 aagtaatcgcgaagggtcatccagttaattgtaccactcaaatacacaccattgttcttttcacgcttaaaccagtaaagtggaagcacggggaaacatt 10571640  T
Q  617 gaatgtttctccatgaatcatcctccatgctgagaactttcaccacacttgtt 669  Q
    |||||||||||| ||||| |||| ||||| |||  ||||||||||||||||||    
T  10571641 gaatgtttctccttgaattatccgccatgttgaatactttcaccacacttgtt 10571693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 669
Target Start/End: Original strand, 10553311 - 10553963
Alignment:
Q  18 aaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtactttattagtaatttgaattggctcgcctctattttc 117  Q
    ||||||||||||| | ||||| |||||||||||||||||||||||| ||||| ||||||| || |||||||||||||  |||| ||||||||||||| ||    
T  10553311 aaactcactttcatcgagttggaaccaaactttcaacgtaatccttggcccataaccaccatattttattagtaattctaatttgctcgcctctattgtc 10553410  T
Q  118 tctgcatttatagataaatgctgcgtcgatttgatcatttgctaatatcaatgcatcacctttcttagaaaggtacaatggcaataactccatcgtttca 217  Q
    |||||| ||||||||||||| || |||| ||| ||||||||| ||||||||||  ||  | |||||||||||||||||||||||||||||||||||||||    
T  10553411 tctgcaattatagataaatgttgtgtcgttttcatcatttgcaaatatcaatgtttccgcattcttagaaaggtacaatggcaataactccatcgtttca 10553510  T
Q  218 aatttcaataaatattggcttgaacaaatattctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataa 317  Q
    |||||||||||||||| |||||||   | ||||| ||||||||| || | ||| |||||||||||||||||||||| ||||||  |||||||||||| ||    
T  10553511 aatttcaataaatattcgcttgaatggaaattctcataactaatgttaagcaactgaatccaagactcttgaactccaaaatctgtcattttccataaaa 10553610  T
Q  318 caaaatggcttcccttgaaatcatgaccaaaacaaagggagtccatcaaaaccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggtag 417  Q
    ||| ||||||||||||||||||||||| ||| |||||  | |  |||||| ||||||  |||||||||||||| | ||||| |||||||||||| || ||    
T  10553611 caagatggcttcccttgaaatcatgacaaaagcaaagacaattgatcaaacccacaagcgttggctgaacacgagacaccttgtcaaaaccccggggaag 10553710  T
Q  418 caacaactgagtgtatgactcagtggacagatcaagcgaaacaatcacatattgctcaacagt-atcttactaacattatcaaattcataatctgaatag 516  Q
    |||||| | ||||||||||||||| || |||||||| ||||||||| |||||||| ||||| | || || ||||||||| ||| ||||||||| ||||||    
T  10553711 caacaattcagtgtatgactcagttgagagatcaagtgaaacaatcccatattgcgcaacactaatattgctaacattaccaatttcataatcagaatag 10553810  T
Q  517 aagtaattgtgaagtgccaaccagttaatagtaccactcaagtaaacaccttggttcttatcatgatcaaaccaataaagtggaagcacagggaaacatt 616  Q
    ||||||| | |||| | |||||||||||| |||||| |||| || ||||| | |||||| ||| | | |||||| |||||||||||||| ||||||||||    
T  10553811 aagtaatcgcgaagggtcaaccagttaattgtaccattcaaatacacaccattgttcttttcacgcttaaaccagtaaagtggaagcacggggaaacatt 10553910  T
Q  617 gaatgtttctccatgaatcatcctccatgctgagaactttcaccacacttgtt 669  Q
    |||||||||||||||||| |||| ||||| |||  ||||||||||||||||||    
T  10553911 gaatgtttctccatgaattatccgccatgttgaatactttcaccacacttgtt 10553963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 249 - 626
Target Start/End: Complemental strand, 10460699 - 10460318
Alignment:
Q  249 tctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgaccaaa 348  Q
    |||||||||||||  | || |||||| |||| ||||| ||||||| ||||| |||||| |  ||||| ||||||||  ||||||| ||||||| |   ||    
T  10460699 tctgataactaataataaataattgagtccatgactcgtgaactccaaaattcttcatctgtcatatcacaaaatgagttcccttaaaatcataagagaa 10460600  T
Q  349 acaaagggagtccatcaaaaccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggacaga 448  Q
    ||||||  |||||||||||||||||| ||||||||||  |||||||||||| || ||||||||||| | ||||| ||||||||||| ||||| ||| |||    
T  10460599 acaaagacagtccatcaaaaccacaagtgttggctgataacgtggcacctcatcgaaaccccgaggcaacaacagctgagtgtatgtctcagaggagaga 10460500  T
Q  449 tcaagcgaaacaatcacatattgctcaacagtatcttactaacat-tatc-----aaattcataatctgaatagaagtaattgtgaagtgccaaccagtt 542  Q
    || |  |||||||||||||||| |||||||||| |  |||| | | | ||     ||| ||||||| |||||  ||||||| |||||| ||||||||| |    
T  10460499 tccaatgaaacaatcacatatttctcaacagtaac--actaccgtctttccaacaaaaatcataatttgaatcaaagtaatcgtgaagggccaaccagct 10460402  T
Q  543 aatagtaccactcaagtaaacaccttggttcttatcatgatcaaaccaataaagtggaagcacagggaaacattgaatgtttct 626  Q
    |||||||||| |||| || ||||| | |||||||||| ||| || ||||||||||||||  ||||| ||||||||||| |||||    
T  10460401 aatagtaccattcaaatacacaccgttgttcttatcacgataaatccaataaagtggaataacaggtaaacattgaatatttct 10460318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 247 - 470
Target Start/End: Original strand, 8443448 - 8443671
Alignment:
Q  247 attctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgacca 346  Q
    |||||||||||||||||| || ||||||||||||||||| ||||||| |||||||||||| | ||| |||||| ||||  ||| ||||||||||| |  |    
T  8443448 attctgataactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatctgccaaataacataatgagttctcttgaaatcataagaa 8443547  T
Q  347 aaacaaagggagtccatcaaaaccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggaca 446  Q
    ||||||||  |||||||||||||  ||| ||||||||||  || |||| |||  |||| |||| |||| | || || |||||||| |||||| ||||| |    
T  8443548 aaacaaagacagtccatcaaaactgcaagtgttggctgatgacatggccccttatcaacaccctgaggcaacagcagctgagtgtgtgactcggtggaga 8443647  T
Q  447 gatcaagcgaaacaatcacatatt 470  Q
    ||||||||||||| ||||||||||    
T  8443648 gatcaagcgaaactatcacatatt 8443671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 247 - 468
Target Start/End: Complemental strand, 10482257 - 10482036
Alignment:
Q  247 attctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgacca 346  Q
    |||||||||| ||||||| || |||||||||||||||   ||||||| |||||||||||||| ||||||||||||||   || |||   |||||||||||    
T  10482257 attctgataagtaattttaaataattgaatccaagacgactgaactccaaaatccttcatttgccatataacaaaataagtttcctcataatcatgacca 10482158  T
Q  347 aaacaaagggagtccatcaaaaccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggaca 446  Q
    ||||||||  | |||||||||||| |||   |||| |||  ||||| |||||  | ||||||||||||||||||||| |||||||||| |||||| || |    
T  10482157 aaacaaagacaatccatcaaaaccgcaagctttggttgatgacgtgacaccttattaaaaccccgaggtagcaacaattgagtgtatgtctcagttgaga 10482058  T
Q  447 gatcaagcgaaacaatcacata 468  Q
    ||||||| |||| |||||||||    
T  10482057 gatcaagtgaaagaatcacata 10482036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 253 - 481
Target Start/End: Complemental strand, 6388310 - 6388082
Alignment:
Q  253 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgaccaaaacaa 352  Q
    ||||||||||||||| | ||||||||||||||||||  | | |||||||||||||| |||||||||| ||||  || |||  |||||||||| |||||||    
T  6388310 ataactaatttttaatagttgaatccaagactcttgggcgccaaaatccttcatttgccatataacagaatgagtttcctcaaaatcatgacaaaaacaa 6388211  T
Q  353 agggagtccatcaaaaccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggacagatcaa 452  Q
    ||  || |||||||||| ||||   ||||||||  |||||| ||||  |||||| ||||||| ||||| || |||||||||  |||| | || |||||||    
T  6388210 agacagcccatcaaaacaacaagctttggctgataacgtggaaccttatcaaaatcccgaggaagcaaaaattgagtgtatttctcacttgatagatcaa 6388111  T
Q  453 gcgaaacaatcacatattgctcaacagta 481  Q
    | |||| ||||||| |||||| |||||||    
T  6388110 gtgaaagaatcacacattgcttaacagta 6388082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 247 - 468
Target Start/End: Complemental strand, 10468118 - 10467898
Alignment:
Q  247 attctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgacca 346  Q
    ||||| |||| ||||||| || |||||||||||||||   ||||||| |||||||||||||| ||||||||||||||   || |||   ||||||||||     
T  10468118 attcttataagtaattttaaataattgaatccaagacgactgaactccaaaatccttcatttgccatataacaaaataagtttcctcataatcatgaccg 10468019  T
Q  347 aaacaaagggagtccatcaaaaccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggaca 446  Q
    ||||||||  | |||||||||||| ||    ||||||||  ||||| |||||  | |||||| |||||||||||||| |||||||||| |||||| || |    
T  10468018 aaacaaagacaatccatcaaaaccgcaggctttggctgatgacgtgacaccttat-aaaacctcgaggtagcaacaattgagtgtatgtctcagttgaga 10467920  T
Q  447 gatcaagcgaaacaatcacata 468  Q
    ||||||| |||| |||||||||    
T  10467919 gatcaagtgaaagaatcacata 10467898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 247 - 480
Target Start/End: Original strand, 8447648 - 8447881
Alignment:
Q  247 attctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgacca 346  Q
    |||||||||| ||||||| || ||||||||||||||||| |||||||  ||||||||||| | ||| |||| |  |||  ||| |||||||||||    |    
T  8447648 attctgataattaattttaaataattgaatccaagactcatgaactccgaaatccttcatctgccaaataaaatgatgagttctcttgaaatcatatgaa 8447747  T
Q  347 aaacaaagggagtccatcaaaaccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggaca 446  Q
    ||||||||  |||||||||||||  ||| ||| || |||   | ||||||||| ||||||||| |||| | ||||| |||||||| |||||| ||||| |    
T  8447748 aaacaaagacagtccatcaaaactgcaagtgtcggatgatgtcatggcacctcatcaaaaccctgaggcaacaacagctgagtgtgtgactcggtggaga 8447847  T
Q  447 gatcaagcgaaacaatcacatattgctcaacagt 480  Q
     | ||||||||||||||| |||||  ||||||||    
T  8447848 tagcaagcgaaacaatcatatattcatcaacagt 8447881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 254 - 481
Target Start/End: Complemental strand, 6392893 - 6392663
Alignment:
Q  254 taactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataa---caaaatggcttcccttgaaatcatgaccaaaac 350  Q
    ||||||||||| || ||||||||||||||||| ||||||| |||||||||||||| |||||| |   |||||||| || |||   | ||| ||| |||||    
T  6392893 taactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatttgccatatgatgacaaaatgggtttcctcatagtcaagacaaaaac 6392794  T
Q  351 aaagggagtccatcaaaaccacaattgttggctgaacacgtggcacc-tcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggacagat 449  Q
    ||||  |||||||||||||||||| | | || |||  || ||||||| |  | |||||   |||| |||||||| | |||||||| ||||||||| |||     
T  6392793 aaagaaagtccatcaaaaccacaagtttcggttgataacatggcaccttattaaaaacattgaggcagcaacaatttagtgtatgtctcagtggagaga- 6392695  T
Q  450 caagcgaaacaatcacatattgctcaacagta 481  Q
    | || |||| ||||||||||||||||||||||    
T  6392694 cgagtgaaagaatcacatattgctcaacagta 6392663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 267 - 470
Target Start/End: Complemental strand, 10464325 - 10464119
Alignment:
Q  267 acaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgaccaaaacaaagggagtccatcaa 366  Q
    ||||||||||||||||||| ||| | | |||||||||||||| |||||||||||||||| |    | |||||||| || |||||||||  | ||||||||    
T  10464325 acaattgaatccaagactcctgatccccaaaatccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaa 10464226  T
Q  367 aaccacaattgttggctgaacacgtggcacc---tcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggacagatcaagcgaaacaatc 463  Q
    ||||||||   ||||||||  |  |||||||   || |||||||||||||| |||||||  |||||||| | ||||||||| ||||  |  |||| ||||    
T  10464225 aaccacaagccttggctgataatctggcacctcatcatcaaaaccccgaggcagcaacagttgagtgtacgtctcagtggaaagattgattgaaagaatc 10464126  T
Q  464 acatatt 470  Q
    |||||||    
T  10464125 acatatt 10464119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 247 - 478
Target Start/End: Complemental strand, 10493753 - 10493520
Alignment:
Q  247 attctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgacca 346  Q
    ||||| ||||| ||||||  | ||||||||||||||||| ||| |||||||||| ||||||||||| || ||||||||| |    | ||||||||||| |    
T  10493753 attcttataaccaattttatataattgaatccaagactcatgatctcgaaaatctttcattttccagattacaaaatgggtattttggaaatcatgacaa 10493654  T
Q  347 aaacaaagggagtccatcaaaaccacaattg--ttggctgaacacgtggcacctcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtgga 444  Q
    ||| ||||  | |||||||| ||||||| ||  ||||  ||  | ||||||  ||  |||||||| |||| | |||||  |||||||||| |||||||||    
T  10493653 aaagaaagacaatccatcaagaccacaagtgttttgggcgataatgtggcagatcaacaaaaccctgaggcaacaacagttgagtgtatgtctcagtgga 10493554  T
Q  445 cagatcaagcgaaacaatcacatattgctcaaca 478  Q
     ||||| |  |||| |||||||||||||||||||    
T  10493553 aagatcgactgaaagaatcacatattgctcaaca 10493520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 251 - 325
Target Start/End: Complemental strand, 837848 - 837774
Alignment:
Q  251 tgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatgg 325  Q
    ||||| |||||||| || ||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||    
T  837848 tgatagctaattttaaataattgaatccaagactcttgaacaccaaaattcttcatttgccatataacaaaatgg 837774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 247 - 324
Target Start/End: Complemental strand, 53774916 - 53774839
Alignment:
Q  247 attctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatg 324  Q
    |||||||||||||||||| |  |||||| |||||||||||| ||||| ||| |||||||||| |||||||||||||||    
T  53774916 attctgataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaatg 53774839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 267 - 470
Target Start/End: Complemental strand, 10475260 - 10475057
Alignment:
Q  267 acaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgaccaaaacaaagggagtccatcaa 366  Q
    ||||||||||||||||||| |   ||| |||||||||||||| |||||||||||||||| |    | |||||||| || |||||||||  | ||||||||    
T  10475260 acaattgaatccaagactcct---ctccaaaatccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaa 10475164  T
Q  367 aaccacaattgttggctgaacacgtggcacc---tcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggacagatcaagcgaaacaatc 463  Q
    ||||||||   ||||||||  |  |||||||   || |||||||||||||| |||||||   ||||| | | ||||||||| ||||  || |||| ||||    
T  10475163 aaccacaagccttggctgataatttggcacctcatcatcaaaaccccgaggcagcaacagtcgagtgaacgtctcagtggaaagattgagtgaaagaatc 10475064  T
Q  464 acatatt 470  Q
    |||||||    
T  10475063 acatatt 10475057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 253 - 325
Target Start/End: Complemental strand, 6372515 - 6372443
Alignment:
Q  253 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatgg 325  Q
    ||||||||||||  | ||||||||| ||||||||||||||| | |||||||||||| |||||||| |||||||    
T  6372515 ataactaattttatataattgaatctaagactcttgaactccagaatccttcatttgccatataataaaatgg 6372443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 251 - 308
Target Start/End: Original strand, 829595 - 829652
Alignment:
Q  251 tgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattt 308  Q
    |||||||||||||| || ||||||| ||||||||||||||| | ||||||||||||||    
T  829595 tgataactaattttaaataattgaacccaagactcttgaacaccaaaatccttcattt 829652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 592 - 662
Target Start/End: Complemental strand, 10481914 - 10481844
Alignment:
Q  592 taaagtggaagcacagggaaacattgaatgtttctccatgaatcatcctccatgctgagaactttcaccac 662  Q
    ||||||||||||||||| ||||||||||| ||||||||  ||| ||||  ||| |||| ||||||||||||    
T  10481914 taaagtggaagcacaggaaaacattgaatatttctccaacaattatccctcatactgaaaactttcaccac 10481844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 691 - 748
Target Start/End: Original strand, 10553997 - 10554054
Alignment:
Q  691 aacgctagtaccttataagttttactcaaaatatcataaccaaaagagaacttaaaat 748  Q
    |||||||  |||||||| ||||||||  |||||||||| |||||||||||||||||||    
T  10553997 aacgctaccaccttatatgttttacttgaaatatcatagccaaaagagaacttaaaat 10554054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 11970980 - 11971053
Alignment:
Q  251 tgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatg 324  Q
    |||||||||||| | |  |||||| ||||||||||||  |||| ||| |||||||||| |||||||||||||||    
T  11970980 tgataactaattctaagaaattgagtccaagactcttccactccaaattccttcatttgccatataacaaaatg 11971053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 700 - 748
Target Start/End: Original strand, 10571736 - 10571784
Alignment:
Q  700 accttataagttttactcaaaatatcataaccaaaagagaacttaaaat 748  Q
    |||||||| ||||||||  |||||||||| |||||||||||||||||||    
T  10571736 accttatatgttttacttgaaatatcatagccaaaagagaacttaaaat 10571784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 10482495 - 10482452
Alignment:
Q  18 aaactcactttcaactagttgaaaccaaactttcaacgtaatcc 61  Q
    ||||||||||||||  ||| ||||||||||||||||||||||||    
T  10482495 aaactcactttcaatgagtcgaaaccaaactttcaacgtaatcc 10482452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 838054 - 838005
Alignment:
Q  18 aaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcc 67  Q
    ||||||| ||||||  | |||||||||||||||||| |||||||||||||    
T  838054 aaactcattttcaatgaattgaaaccaaactttcaaagtaatccttagcc 838005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 629
Target Start/End: Complemental strand, 10467776 - 10467739
Alignment:
Q  592 taaagtggaagcacagggaaacattgaatgtttctcca 629  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  10467776 taaagtggaagcacaggaaaacattgaatatttctcca 10467739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 10475527 - 10475482
Alignment:
Q  18 aaactcactttcaactagttgaaaccaaactttcaacgtaatcctt 63  Q
    |||||||||||||||  || ||||| ||||||||||||||||||||    
T  10475527 aaactcactttcaacgtgtcgaaactaaactttcaacgtaatcctt 10475482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 35767070 - 35767017
Alignment:
Q  271 ttgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatg 324  Q
    ||||||||||||||||| ||||| ||| || | ||| |||||||||||||||||    
T  35767070 ttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaatg 35767017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 3e-35; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 252 - 476
Target Start/End: Complemental strand, 25377145 - 25376921
Alignment:
Q  252 gataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgaccaaaaca 351  Q
    ||||||||||||| || ||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||| || |||  |||||||||| ||||||    
T  25377145 gataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatcatccatataacaaaatggttttcctccaaatcatgacaaaaaca 25377046  T
Q  352 aagggagtccatcaaaaccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggacagatca 451  Q
    |||  ||||| |||||||||||| | ||||  |   ||  |||||||  | ||| || |||||||| | ||   ||||||||| |||||| || |||||     
T  25377045 aagacagtccgtcaaaaccacaagttttggtagtgaacagggcaccttcttaaatcctcgaggtagaatcagtcgagtgtatgtctcagtcgagagatcg 25376946  T
Q  452 agcgaaacaatcacatattgctcaa 476  Q
    ||||||||||||||||||| |||||    
T  25376945 agcgaaacaatcacatatttctcaa 25376921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 255 - 337
Target Start/End: Original strand, 18913559 - 18913641
Alignment:
Q  255 aactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaa 337  Q
    |||||||||| |  |||||| |||||||||||||||||| ||| ||| |||| |||||||||||||||||| ||||| |||||    
T  18913559 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggttcccctgaaa 18913641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 251 - 334
Target Start/End: Complemental strand, 20975630 - 20975547
Alignment:
Q  251 tgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttg 334  Q
    ||||| |||| ||| ||||||||||||||||| |||| ||||| ||| ||| |||||| |||||||||||||||  ||||||||    
T  20975630 tgatacctaaatttaaacaattgaatccaagaatcttcaactccaaattccctcatttgccatataacaaaatgatttcccttg 20975547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 255 - 325
Target Start/End: Original strand, 18908811 - 18908881
Alignment:
Q  255 aactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatgg 325  Q
    |||||||||| |  |||||| |||||||||||||||||| ||| ||| |||| ||||||||||||||||||    
T  18908811 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgg 18908881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 255 - 325
Target Start/End: Original strand, 18920767 - 18920837
Alignment:
Q  255 aactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatgg 325  Q
    |||||||||| |  |||||| |||||||||||||||||| ||| ||| |||| ||||||||||||||||||    
T  18920767 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgg 18920837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 14514970 - 14514882
Alignment:
Q  253 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcat 341  Q
    |||||||||||| |  |||||| ||||||| |||| ||||| ||| || | ||||||||||||||||| |||| ||  |||||||||||    
T  14514970 ataactaattttaaggaattgagtccaagaatcttcaactccaaattcatccattttccatataacaagatgggttttcttgaaatcat 14514882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 276 - 354
Target Start/End: Complemental strand, 20980651 - 20980573
Alignment:
Q  276 tccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgaccaaaacaaag 354  Q
    |||||||||||| ||||| ||| ||  |||||||||||||||||||||   |||| ||| ||| ||||| |||||||||    
T  20980651 tccaagactcttcaactctaaattctgtcattttccatataacaaaatcatttccgttggaataatgacaaaaacaaag 20980573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 253 - 464
Target Start/End: Original strand, 50645485 - 50645696
Alignment:
Q  253 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgaccaaaacaa 352  Q
    |||||||||||| || ||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||  ||||||  |||||||||  || ||||    
T  50645485 ataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatttgccacataacaaaatgagttccctcaaaatcatgaaaaatacaa 50645584  T
Q  353 agggagtccatcaaaaccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggacagatcaa 452  Q
    ||   |||| | ||||||  || ||||||||||  |||||| | || || |||||||||||| |||||||  |||||||||| ||| ||||| |||||||    
T  50645585 agattgtcccttaaaaccttaagtgttggctgataacgtggaagcttgtgaaaaccccgaggcagcaacagttgagtgtatgtctcggtggagagatcaa 50645684  T
Q  453 gcgaaacaatca 464  Q
    | |||| |||||    
T  50645685 gtgaaagaatca 50645696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 253 - 323
Target Start/End: Complemental strand, 4570997 - 4570927
Alignment:
Q  253 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaat 323  Q
    |||||||||||| | ||||||| ||||||| |||| ||| | ||| | |||||||| ||||||||||||||    
T  4570997 ataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 4570927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 269 - 478
Target Start/End: Complemental strand, 26256829 - 26256620
Alignment:
Q  269 aattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgaccaaaacaaagggagtccatcaaaa 368  Q
    |||||| |||||||||||||||||| | | |||||||| | ||||| ||||||||   || |||||  |||||||  |||||||||| | ||||||||||    
T  26256829 aattgagtccaagactcttgaactccatactccttcatctgccataaaacaaaatcattttccttggtatcatgagaaaaacaaaggcattccatcaaaa 26256730  T
Q  369 ccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggacagatcaagcgaaacaatcacata 468  Q
    ||  ||    ||||||||||  ||||||||| ||||||||  |||| |||||||||||  |||||| ||| || || ||||||||||||| ||||||| |    
T  26256729 ccttaagaactggctgaacaaatggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaataatcacaaa 26256630  T
Q  469 ttgctcaaca 478  Q
    ||||||||||    
T  26256629 ttgctcaaca 26256620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 245 - 354
Target Start/End: Complemental strand, 22063720 - 22063611
Alignment:
Q  245 atattctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgac 344  Q
    |||||||||||||||||||| || || ||| ||||||||||||||| || ||| |||||||||| |||||||||||||||  ||   ||||||||||||     
T  22063720 atattctgataactaattttgaataactgagtccaagactcttgaaatccaaattccttcatttgccatataacaaaatgagtttgtttgaaatcatgaa 22063621  T
Q  345 caaaacaaag 354  Q
     |||||||||    
T  22063620 aaaaacaaag 22063611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 245 - 354
Target Start/End: Complemental strand, 22100571 - 22100462
Alignment:
Q  245 atattctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgac 344  Q
    |||||||||||||||||||| || || ||| |||||||||||||||||| ||| | |||||||| |||||||| ||||||  ||   ||||||||||||     
T  22100571 atattctgataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgag 22100472  T
Q  345 caaaacaaag 354  Q
     |||||||||    
T  22100471 aaaaacaaag 22100462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 250 - 338
Target Start/End: Complemental strand, 19357983 - 19357895
Alignment:
Q  250 ctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaat 338  Q
    |||| ||||||||||||| |||||| |||||||||||||||||| ||| ||| |||| ||||||| ||| |||||| | || |||||||    
T  19357983 ctgaaaactaatttttaagaattgagtccaagactcttgaactccaaattccatcatcttccataaaacgaaatgggtccctttgaaat 19357895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 335 - 427
Target Start/End: Original strand, 19597737 - 19597828
Alignment:
Q  335 aaatcatgaccaaaacaaagggagtccatcaaaaccacaattgttggctgaacacgtggcacctcgtcaaaaccccgaggtagcaacaactga 427  Q
    |||||||||| |||||||||||| ||||||||||| ||||  |||||| ||||| ||||||| |  ||||||||||||||  |||||||||||    
T  19597737 aaatcatgacaaaaacaaagggaatccatcaaaacaacaagagttggc-gaacaggtggcacattatcaaaaccccgagggggcaacaactga 19597828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 251 - 322
Target Start/End: Original strand, 660845 - 660916
Alignment:
Q  251 tgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaa 322  Q
    |||||||||||||| |  |||||| |||||||||||| ||||||||| |||||||| | |||||||||||||    
T  660845 tgataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataacaaaa 660916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 22070187 - 22070080
Alignment:
Q  247 attctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgacca 346  Q
    ||||| |||||||||||| || ||  || |||||||||||||||||| ||| | |||||||| |||||||| ||||||  |||  ||||||||||||  |    
T  22070187 attcttataactaattttgaataaccgagtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagttcgtttgaaatcatgagaa 22070088  T
Q  347 aaacaaag 354  Q
    ||||||||    
T  22070087 aaacaaag 22070080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 22080944 - 22080837
Alignment:
Q  247 attctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgacca 346  Q
    |||||||||||||||||| || ||  || |||||||||||||||||| ||| | |||||||| |||||||| ||||||  ||   ||||||||||||  |    
T  22080944 attctgataactaattttgaataaccgagtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagtttgtttgaaatcatgagaa 22080845  T
Q  347 aaacaaag 354  Q
    ||||||||    
T  22080844 aaacaaag 22080837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 269 - 335
Target Start/End: Complemental strand, 22028682 - 22028616
Alignment:
Q  269 aattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttga 335  Q
    |||||| |||||||||||| ||||| | ||||| ||||||||||||||||||||||| || ||||||    
T  22028682 aattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttga 22028616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 247 - 324
Target Start/End: Complemental strand, 14076754 - 14076677
Alignment:
Q  247 attctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatg 324  Q
    |||||||||||||||||| |  |||||| ||||||| |||| ||||| ||| |||||||||| ||||||||| |||||    
T  14076754 attctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatg 14076677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 247 - 324
Target Start/End: Complemental strand, 14386782 - 14386705
Alignment:
Q  247 attctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatg 324  Q
    |||||||||||||||||| |  |||||| ||||||| |||| ||||| ||| |||||||||| ||||||||| |||||    
T  14386782 attctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatg 14386705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 269 - 354
Target Start/End: Original strand, 15571911 - 15571996
Alignment:
Q  269 aattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgaccaaaacaaag 354  Q
    ||||||| ||||||||||| ||||| ||| ||| |||||| ||| || ||||||||| ||||||||||||||| |  |||||||||    
T  15571911 aattgaacccaagactcttcaactccaaactccctcatttgccacatgacaaaatgggttcccttgaaatcataagaaaaacaaag 15571996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 1985955 - 1986043
Alignment:
Q  253 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcat 341  Q
    |||||||||||| ||||||||| ||||||| |||| ||| | ||| |||||||||| ||| | |||||||||| ||  |||||||||||    
T  1985955 ataactaattttaaacaattgagtccaagattcttcaacgccaaattccttcatttgccaaagaacaaaatgggttttcttgaaatcat 1986043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 273 - 389
Target Start/End: Original strand, 19637237 - 19637353
Alignment:
Q  273 gaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgaccaaaacaaagggagtccatcaaaaccac 372  Q
    ||||||| ||||||||||||| ||| |||||||||| |||||||| |||||   |||| || |||||||||   || ||||||||||||| ||| || ||    
T  19637237 gaatccacgactcttgaactccaaattccttcatttgccatataataaaatcagttccattaaaatcatgagacaagcaaagggagtccagcaacacaac 19637336  T
Q  373 aattgttggctgaacac 389  Q
    ||  ||||| |||||||    
T  19637337 aagagttggttgaacac 19637353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 366
Target Start/End: Original strand, 16846480 - 16846577
Alignment:
Q  269 aattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgaccaaaacaaagggagtccatcaa 366  Q
    |||||| |||||||||||||||||| | ||||  |||| ||||||||||||| |||  ||  ||||| | |||||  |||||||||| ||||||||||    
T  16846480 aattgagtccaagactcttgaactccataatctgtcatcttccatataacaagatgagtttgcttgacaacatgagaaaaacaaaggcagtccatcaa 16846577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 19645454 - 19645499
Alignment:
Q  18 aaactcactttcaactagttgaaaccaaactttcaacgtaatcctt 63  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  19645454 aaacttactttcaacaagttgaaaccaaactttcaacataatcctt 19645499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 20058057 - 20058145
Alignment:
Q  253 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcat 341  Q
    |||||||||||| |  ||||||  ||||||||||| |||||  || |||| ||||||||||||||||||||| |||  ||| |||||||    
T  20058057 ataactaattttaagaaattgacaccaagactcttcaactctgaattcctccattttccatataacaaaatgactttgcttaaaatcat 20058145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 275 - 354
Target Start/End: Complemental strand, 9807872 - 9807793
Alignment:
Q  275 atccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgaccaaaacaaag 354  Q
    ||||||||||||| ||||| ||| |||||||| | ||||||||| |||| | ||  ||| |||||||||| |||||||||    
T  9807872 atccaagactcttcaactccaaattccttcatctgccatataacgaaatcggttttcttcaaatcatgacaaaaacaaag 9807793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 478
Target Start/End: Complemental strand, 26237546 - 26237459
Alignment:
Q  391 tggcacctcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggacagatcaagcgaaacaatcacatattgctcaaca 478  Q
    ||||||||| ||||||||  |||| | |||||||||  |||||| ||  || || ||||||||||||| ||||||| |||||||||||    
T  26237546 tggcacctcatcaaaaccttgaggcaacaacaactgtttgtatgtctttgtcgaaagatcaagcgaaagaatcacaaattgctcaaca 26237459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 24031307 - 24031257
Alignment:
Q  271 ttgaatccaagactcttgaactcgaaaatccttcattttccatataacaaa 321  Q
    |||| |||||||||||||||||| ||| || |||||||||||||| |||||    
T  24031307 ttgagtccaagactcttgaactccaaactcattcattttccatatgacaaa 24031257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 366
Target Start/End: Original strand, 16839397 - 16839494
Alignment:
Q  269 aattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgaccaaaacaaagggagtccatcaa 366  Q
    |||||| |||||||||||||||||| | ||||  |||| ||||||||||||| |||  ||  ||| | | |||||  |||||||||| ||||||||||    
T  16839397 aattgagtccaagactcttgaactccataatctgtcatcttccatataacaagatgagttttcttaacaacatgagaaaaacaaaggcagtccatcaa 16839494  T

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Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 276 - 321
Target Start/End: Original strand, 23999478 - 23999523
Alignment:
Q  276 tccaagactcttgaactcgaaaatccttcattttccatataacaaa 321  Q
    |||| |||| |||||||| ||| |||||||||||||||||||||||    
T  23999478 tccacgacttttgaactccaaactccttcattttccatataacaaa 23999523  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 276 - 478
Target Start/End: Original strand, 19746717 - 19746919
Alignment:
Q  276 tccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgaccaaaacaaagggagtccatcaaaaccacaat 375  Q
    |||||||||||||||||| ||| | |||||||| |||||||||||| |   ||||||||||||| ||   ||| |||||| ||||||||| |||   ||     
T  19746717 tccaagactcttgaactccaaacttcttcatttgccatataacaaattcagttcccttgaaatcgtgcgaaaagcaaaggcagtccatcagaacatgaag 19746816  T
Q  376 tgttggctgaacacgtggcacctcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggacagatcaagcgaaacaatcacatattgctca 475  Q
     ||||||||||   |||| || || ||||||||    || ||||| || || ||||||| |||||| || |||||||| |||||||||||| ||||||||    
T  19746817 agttggctgaaagtgtgggacttcatcaaaaccaaatggcagcaaaaattgtgtgtatgtctcagtcgaaagatcaagggaaacaatcacaaattgctca 19746916  T
Q  476 aca 478  Q
    |||    
T  19746917 aca 19746919  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 276 - 479
Target Start/End: Complemental strand, 33576217 - 33576014
Alignment:
Q  276 tccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgaccaaaacaaagggagtccatcaaaaccacaat 375  Q
    |||||||||||||||||| ||| ||||||||  ||||||||||||| |   ||||||| ||||| ||   |||||||||| ||||||||| |||   ||     
T  33576217 tccaagactcttgaactccaaactccttcatcatccatataacaaattcagttcccttaaaatcgtgcgaaaaacaaaggcagtccatcagaactcgaac 33576118  T
Q  376 tgttggctgaacacgtggcacctcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggacagatcaagcgaaacaatcacatattgctca 475  Q
    || ||||| | ||   |||| ||| | |||||||  ||| ||||| || || ||||||| ||| ||  | ||||||||||||||||||||| ||| ||||    
T  33576117 tgatggcttatcataaggcagctccttaaaacccgtaggaagcaaaaattgtgtgtatgtctctgtcaaaagatcaagcgaaacaatcacacatttctca 33576018  T
Q  476 acag 479  Q
    ||||    
T  33576017 acag 33576014  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 251 - 323
Target Start/End: Complemental strand, 20770722 - 20770650
Alignment:
Q  251 tgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaat 323  Q
    |||||||||||||| |  ||||||||||| ||||||| || || ||| |||||||||| ||||||||||||||    
T  20770722 tgataactaattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccatataacaaaat 20770650  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 255 - 325
Target Start/End: Original strand, 6954521 - 6954591
Alignment:
Q  255 aactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatgg 325  Q
    |||||||||| | ||||||| ||||||| |||| ||||| ||| |||||||||| ||| ||||||||||||    
T  6954521 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgg 6954591  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 253 - 366
Target Start/End: Original strand, 6947880 - 6947993
Alignment:
Q  253 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgaccaaaacaa 352  Q
    |||||||||||| |  |||||| ||||||| |||| ||||| ||| |||||||||| ||| | |||||| ||| ||  ||||||||||||   |||||||    
T  6947880 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccaaagaacaaagtgggttttcttgaaatcatgtgaaaaacaa 6947979  T
Q  353 agggagtccatcaa 366  Q
    ||| | ||||||||    
T  6947980 aggcaatccatcaa 6947993  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 253 - 325
Target Start/End: Original strand, 6921350 - 6921422
Alignment:
Q  253 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatgg 325  Q
    |||||||||||| |  |||||| ||||||| |||| ||||| ||| |||||||||| ||| ||||||||||||    
T  6921350 ataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgg 6921422  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 247 - 308
Target Start/End: Complemental strand, 17369740 - 17369679
Alignment:
Q  247 attctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattt 308  Q
    |||||||||||||||||| |  |||||| ||||||| |||| ||||| ||| ||||||||||    
T  17369740 attctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcattt 17369679  T

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Target: scaffold0867 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 245 - 354
Target Start/End: Original strand, 4661 - 4770
Alignment:
Q  245 atattctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgac 344  Q
    |||||||||||||||||||| || || ||| |||||||||||||||||| ||| | |||||||| |||||||| ||||||  ||   ||||||||||||     
T  4661 atattctgataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgag 4760  T
Q  345 caaaacaaag 354  Q
     |||||||||    
T  4761 aaaaacaaag 4770  T

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Target: scaffold0464 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 250 - 337
Target Start/End: Complemental strand, 8134 - 8047
Alignment:
Q  250 ctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaa 337  Q
    |||| |||||||||| |  |||||||||||||| ||||||||||  || ||| ||||  |||||| |||||||||| |||||||||||    
T  8134 ctgaaaactaattttgagaaattgaatccaagaatcttgaactccgaattccatcatcatccataaaacaaaatgggttcccttgaaa 8047  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 27618567 - 27618460
Alignment:
Q  247 attctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatggcttcccttgaaatcatgacca 346  Q
    |||||||||||||| ||| | ||| ||| |||||||||||| |||||  |  || | |||||||||||||||||||||  ||  ||| |||||||||| |    
T  27618567 attctgataactaactttaagcaactgagtccaagactcttcaactccgagttcttccattttccatataacaaaatgagtttgcttaaaatcatgacaa 27618468  T
Q  347 aaacaaag 354  Q
    ||||||||    
T  27618467 aaacaaag 27618460  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 533 - 566
Target Start/End: Original strand, 42846838 - 42846871
Alignment:
Q  533 ccaaccagttaatagtaccactcaagtaaacacc 566  Q
    ||||||||||||||||||||||||| ||||||||    
T  42846838 ccaaccagttaatagtaccactcaaataaacacc 42846871  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 462
Target Start/End: Complemental strand, 23086714 - 23086643
Alignment:
Q  391 tggcacctcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggacagatcaagcgaaacaat 462  Q
    ||||||||| ||||||||  |||| |||||||||||  |||||| ||| || || |||||||||||||||||    
T  23086714 tggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgatagatcaagcgaaacaat 23086643  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 23086839 - 23086784
Alignment:
Q  266 aacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaa 321  Q
    ||||| ||| |||||||||||||||||| ||| |||||||| | ||||||||||||    
T  23086839 aacaactgagtccaagactcttgaactccaaactccttcatctgccatataacaaa 23086784  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 247 - 317
Target Start/End: Original strand, 18964824 - 18964894
Alignment:
Q  247 attctgataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataa 317  Q
    ||||||||||| |||||| |  |||||| ||||||| |||| ||||| ||| |||||||||| ||||||||    
T  18964824 attctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataa 18964894  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 37935388 - 37935314
Alignment:
Q  20 actcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtactttattagtaatt 94  Q
    |||||||||||   ||| | |||||||||||||||||||||||| |||| |||||||| |  | |||||||||||    
T  37935388 actcactttcattgagtcggaaccaaactttcaacgtaatcctttgcccgcaaccaccatgttctattagtaatt 37935314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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