View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2108_low_23 (Length: 227)

Name: NF2108_low_23
Description: NF2108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2108_low_23
NF2108_low_23
[»] chr2 (3 HSPs)
chr2 (43-227)||(11814568-11814751)
chr2 (83-160)||(31212847-31212924)
chr2 (139-198)||(157973-158033)
[»] chr8 (4 HSPs)
chr8 (93-223)||(35318810-35318941)
chr8 (138-198)||(11384744-11384804)
chr8 (99-152)||(7940314-7940367)
chr8 (95-155)||(11426085-11426145)
[»] chr3 (6 HSPs)
chr3 (98-190)||(29174526-29174618)
chr3 (108-198)||(23701816-23701907)
chr3 (108-198)||(23720271-23720362)
chr3 (108-198)||(23738727-23738818)
chr3 (138-198)||(29556423-29556484)
chr3 (138-190)||(6512465-6512517)
[»] chr1 (2 HSPs)
chr1 (93-209)||(32186637-32186754)
chr1 (96-190)||(1674625-1674720)
[»] scaffold0188 (1 HSPs)
scaffold0188 (138-198)||(6315-6376)
[»] chr7 (4 HSPs)
chr7 (128-182)||(37072286-37072340)
chr7 (81-155)||(44395812-44395886)
chr7 (138-198)||(15643482-15643543)
chr7 (81-189)||(27300179-27300286)
[»] chr4 (2 HSPs)
chr4 (81-155)||(5415780-5415854)
chr4 (138-198)||(53370277-53370338)
[»] chr5 (1 HSPs)
chr5 (91-162)||(31126580-31126652)


Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 43 - 227
Target Start/End: Complemental strand, 11814751 - 11814568
Alignment:
Q  43 cacacactttatctttattataaatttattgtgctatcttttttcatgagaattgttcttctattttgcacttgtaacttttaagaatgttaatgatctt 142  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  11814751 cacacactttatctttattataaatttaatgtcctatcttttttcatg-gaattgttcttctattttgtacttgtaatttttaagaatgttaatgatctt 11814653  T
Q  143 atttataaaatttcaactttccatgtaaccattattatagataacaaattttgtttcatataagtttgagtttgcacataacaaa 227  Q
    ||||||||||||| ||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11814652 atttataaaattttaactttctatgaaaccattattataggtaacaaattttgtttcatataagtttgagtttgcacataacaaa 11814568  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 31212924 - 31212847
Alignment:
Q  83 ttttcatgagaattgttcttctattttgcacttgtaacttttaagaatgttaatgatcttatttataaaatttcaact 160  Q
    ||||||| ||||||||| || |||||||||||||  |||||||| ||||||| |||||||| | ||| ||||| ||||    
T  31212924 ttttcattagaattgttattatattttgcacttgagacttttaacaatgttattgatcttaataatagaattttaact 31212847  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 157973 - 158033
Alignment:
Q  139 tcttatttataaaatttcaactttccatgtaaccattattatagataac-aaattttgttt 198  Q
    ||||||||||||||||| |||| | |||  ||||||||||||||||||| |||||||||||    
T  157973 tcttatttataaaattttaactcttcattgaaccattattatagataacaaaattttgttt 158033  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 93 - 223
Target Start/End: Complemental strand, 35318941 - 35318810
Alignment:
Q  93 aattgttcttctattttgcacttgtaacttttaagaatgttaatgatcttatttataaaatttcaactttccatgtaaccattattatagataac-aaat 191  Q
    |||||||||| |||||||| |||| || |||||| ||||||| |||||||||||||  ||||| |||| | |||| ||||||||||| || |||| ||||    
T  35318941 aattgttcttttattttgcgcttgaaatttttaacaatgttactgatcttatttatggaattttaactcttcatggaaccattattaaaggtaacaaaat 35318842  T
Q  192 tttgtttcatataagtttgagtttgcacataa 223  Q
    |||||||||| ||||||| | |||||| ||||    
T  35318841 tttgtttcatgtaagtttaaatttgcatataa 35318810  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 11384804 - 11384744
Alignment:
Q  138 atcttatttataaaatttcaactttccatgtaaccattattatagataacaaattttgttt 198  Q
    ||||||||||||||||||||||| |  ||  ||| ||||||||||||||||||||||||||    
T  11384804 atcttatttataaaatttcaactatttataaaactattattatagataacaaattttgttt 11384744  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 7940367 - 7940314
Alignment:
Q  99 tcttctattttgcacttgtaacttttaagaatgttaatgatcttatttataaaa 152  Q
    |||| ||||||| ||||| || |||||| |||||||| ||||||||||||||||    
T  7940367 tcttttattttgtacttgaaatttttaataatgttaacgatcttatttataaaa 7940314  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 11426145 - 11426085
Alignment:
Q  95 ttgttcttctattttgcacttgtaacttttaagaatgttaatgatcttatttataaaattt 155  Q
    |||||||||||||||| ||||  || |||||| ||||||| ||||||||||| || |||||    
T  11426145 ttgttcttctattttgaactttaaaattttaacaatgttagtgatcttatttttagaattt 11426085  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 29174526 - 29174618
Alignment:
Q  98 ttcttctattttgcacttgtaacttttaagaatgttaatgatcttatttataaaatttcaactttccatgtaaccattattatagataacaaa 190  Q
    ||||||||||||||||||| |  |||||| |||||| ||||| |||||||||| ||||||||| | |||| |||||||||||||  |||||||    
T  29174526 ttcttctattttgcacttgaattttttaacaatgttcatgattttatttataatatttcaactcttcatgaaaccattattatatgtaacaaa 29174618  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 23701816 - 23701907
Alignment:
Q  108 ttgcacttgtaacttttaagaatgttaatgatcttatttataaaatttcaactttccatgtaaccattattatagataac-aaattttgttt 198  Q
    ||||| ||| || |||||| ||||| | | |||||||||||| |||||||| | | |||| ||||||| ||||||||||| |||||||||||    
T  23701816 ttgcatttgaaatttttaacaatgtcactcatcttatttatagaatttcaattattcatgaaaccattgttatagataacaaaattttgttt 23701907  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 23720271 - 23720362
Alignment:
Q  108 ttgcacttgtaacttttaagaatgttaatgatcttatttataaaatttcaactttccatgtaaccattattatagataac-aaattttgttt 198  Q
    ||||| ||| || |||||| ||||| | | |||||||||||| |||||||| | | |||| ||||||| ||||||||||| |||||||||||    
T  23720271 ttgcatttgaaatttttaacaatgtcactcatcttatttatagaatttcaattattcatgaaaccattgttatagataacaaaattttgttt 23720362  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 23738727 - 23738818
Alignment:
Q  108 ttgcacttgtaacttttaagaatgttaatgatcttatttataaaatttcaactttccatgtaaccattattatagataac-aaattttgttt 198  Q
    ||||| ||| || |||||| ||||| | | |||||||||||| |||||||| | | |||| ||||||| ||||||||||| |||||||||||    
T  23738727 ttgcatttgaaatttttaacaatgtcactcatcttatttatagaatttcaattattcatgaaaccattgttatagataacaaaattttgttt 23738818  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 29556423 - 29556484
Alignment:
Q  138 atcttatttataaaatttcaactttccatgtaaccattattatagataac-aaattttgttt 198  Q
    |||||||||||| |||||||||| | |||| ||||||||||| || |||| |||||||||||    
T  29556423 atcttatttatagaatttcaactattcatgaaaccattattaaaggtaacaaaattttgttt 29556484  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 6512465 - 6512517
Alignment:
Q  138 atcttatttataaaatttcaactttccatgtaaccattattatagataacaaa 190  Q
    |||||||||||||||| | |||| | |||| |||||||||||||| |||||||    
T  6512465 atcttatttataaaatgttaactcttcatgaaaccattattataggtaacaaa 6512517  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 32186754 - 32186637
Alignment:
Q  93 aattgttcttctattttgcacttgtaacttttaagaatgttaatgatcttatttataaaatttcaactttccatgtaaccattattatagataac-aaat 191  Q
    ||||||||||||||||||   ||| || |||||| ||||||||| |||||||||||| ||||| ||||||  ||| || |||| |||| | |||| ||||    
T  32186754 aattgttcttctattttgattttgaaatttttaacaatgttaataatcttatttatagaattttaactttttatggaatcattgttatggttaacaaaat 32186655  T
Q  192 tttgtttcatataagttt 209  Q
    |||||||||| |||||||    
T  32186654 tttgtttcatgtaagttt 32186637  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 190
Target Start/End: Original strand, 1674625 - 1674720
Alignment:
Q  96 tgttcttctattttgcacttgtaacttttaagaa-tgttaatgatcttatttataaaatttcaactttccatgtaaccattattatagataacaaa 190  Q
    ||||||| || |||||||||| || |||||| || | ||| | |||||||||||| ||||| |||||| |||| ||||||||| ||||||||||||    
T  1674625 tgttcttttactttgcacttgaaatttttaacaagtattactcatcttatttatagaattttaacttttcatggaaccattatcatagataacaaa 1674720  T

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Target: scaffold0188 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 6315 - 6376
Alignment:
Q  138 atcttatttataaaatttcaactttccatgtaaccattattatagataac-aaattttgttt 198  Q
    |||||||||||| ||||| |||| | |||| ||||||||||||||||||| |||||||||||    
T  6315 atcttatttatagaattttaactattcatgaaaccattattatagataacaaaattttgttt 6376  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 37072286 - 37072340
Alignment:
Q  128 aatgttaatgatcttatttataaaatttcaactttccatgtaaccattattatag 182  Q
    ||||||| | ||||||||||||||||||||||| | |||  ||||||||||||||    
T  37072286 aatgttactcatcttatttataaaatttcaactcttcataaaaccattattatag 37072340  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 44395812 - 44395886
Alignment:
Q  81 ttttttcatgagaattgttcttctattttgcacttgtaacttttaagaatgttaatgatcttatttataaaattt 155  Q
    |||||| || ||| |||||||||||||||| ||||  || |||||| ||||||| ||||||||||| || |||||    
T  44395812 tttttttatcagatttgttcttctattttgtactttaaatttttaacaatgttagtgatcttatttttagaattt 44395886  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 15643543 - 15643482
Alignment:
Q  138 atcttatttataaaatttcaactttccatgtaaccattattatagataac-aaattttgttt 198  Q
    |||||||||||| ||||| |||| | |||||||||||||| |||| |||| |||||||||||    
T  15643543 atcttatttatagaattttaactcttcatgtaaccattatgatagctaacaaaattttgttt 15643482  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 27300286 - 27300179
Alignment:
Q  81 ttttttcatgagaattgttcttctattttgcacttgtaacttttaagaatgttaatgatcttatttataaaatttcaactttccatgtaaccattattat 180  Q
    ||||||||| | ||||||||| |||||||||||| | ||  ||||| ||||||| | || |||| | |||||||| |||| | |||| |||||||| |||    
T  27300286 ttttttcatcataattgttct-ctattttgcactggaaatctttaacaatgttactaatattatatttaaaatttgaactcttcatgaaaccattaatat 27300188  T
Q  181 agataacaa 189  Q
    || ||||||    
T  27300187 aggtaacaa 27300179  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 5415854 - 5415780
Alignment:
Q  81 ttttttcatgagaattgttcttctattttgcacttgtaacttttaagaatgttaatgatcttatttataaaattt 155  Q
    |||||| || ||| |||||||||||||||| ||||  || |||||| ||||||| ||||||||||| || |||||    
T  5415854 tttttttatcagatttgttcttctattttgtactttaaatttttaacaatgttagtgatcttatttttagaattt 5415780  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 53370277 - 53370338
Alignment:
Q  138 atcttatttataaaatttcaactttccatgtaaccattattatagataacaaa-ttttgttt 198  Q
    |||||||||||| ||||| |||| | || |||||||||||||||| ||||||| ||||||||    
T  53370277 atcttatttatagaattttaactattcaagtaaccattattataggtaacaaacttttgttt 53370338  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 31126652 - 31126580
Alignment:
Q  91 agaattgttcttctattttgcacttg-taacttttaagaatgttaatgatcttatttataaaatttcaacttt 162  Q
    |||||| ||||||||||||||||||| |   |||||| ||||||| |||| ||| ||||| ||||||||||||    
T  31126652 agaattattcttctattttgcacttgattttttttaacaatgttattgattttacttatagaatttcaacttt 31126580  T

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