View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2108_low_24 (Length: 225)
Name: NF2108_low_24
Description: NF2108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2108_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 32888469 - 32888277
Alignment:
| Q |
17 |
gagaagaagaatgaaaacttcagtttgattaaaagttaaacggttttggtcgattatgcttattatatatgcnnnnnnnnagtttggaactatttctttt |
116 |
Q |
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| T |
32888469 |
gagaagaagaatgaaaacttcagtttaattaaaagttaaacggttttggtcgattatgcttattatatatgcttttttttagtttggaactatttgtttt |
32888370 |
T |
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| Q |
117 |
ctggaaaatatgctatctattttagattcttagaaccagataaaaatagcaaacgaatacatccatttagtggatgtgtaacactttatatct |
209 |
Q |
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| T |
32888369 |
ctggaaaatatgctatctattttagatttttagaaccagataaaaatagcaaacgaatacatccatttagtggatgtgtaccactttatatct |
32888277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 32883326 - 32883142
Alignment:
| Q |
16 |
tgagaagaagaatgaaaacttcagtttgattaaaagttaaacggttttggtcgattatgcttattatatatgcnnnnnnnnagtttggaactatttcttt |
115 |
Q |
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| T |
32883326 |
tgagaaggagaatgaaaccttaagtttaattaaaagttaaacggttttggtcgatt----ttattatatatgcttt-----agtttggaactattttttt |
32883236 |
T |
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| Q |
116 |
tctggaaaatatgctatctattttagattcttagaaccagataaaaatagcaaacgaatacatccatttagtggatgtgtaacactttatatct |
209 |
Q |
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| T |
32883235 |
tttggaaaatatacaatcttttttagatttttagaaccagataaaaatagcaaacgaatacatccatttagtggacgtgtaccactttatatct |
32883142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 209
Target Start/End: Complemental strand, 32877434 - 32877297
Alignment:
| Q |
58 |
ggttttggtcgattatgcttattatatatgcnnnnnnnnagtttggaactatttcttttctggaaaatatgctatctattttagattcttagaaccagat |
157 |
Q |
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| T |
32877434 |
ggttttggtcgattatgcttattatatatgcttttttt-agtttggaactatttgttttttggaaaatatgctat-------------ttagaaccagat |
32877349 |
T |
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| Q |
158 |
aaaaatagcaaacgaatacatccatttagtggatgtgtaacactttatatct |
209 |
Q |
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| T |
32877348 |
aaaaatagcaaacgaatacatccatgtagtggatgtgtaccactttatatct |
32877297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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