View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2108_low_25 (Length: 218)
Name: NF2108_low_25
Description: NF2108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2108_low_25 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 43530817 - 43531033
Alignment:
| Q |
1 |
aacactattttggttttatgttatttatacatttacattaactagagtgcatagcatacctgagctgcaacaatgcagagaaaaactgtaagaatactaa |
100 |
Q |
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| T |
43530817 |
aacactattttggttt-atgttatttatacatttacattaactagagtgcatagcatacctgagctgcaacaatgcagagaaaaactgtaagaatactaa |
43530915 |
T |
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| Q |
101 |
ggaaaaaggaccctgcactgagtctcagaccagccatgaaataaacaactaggaggaaaagcaccggtaatacaaggtctagtggaagatcacttgtagt |
200 |
Q |
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| T |
43530916 |
ggaaaaaggaccctgcactgagtctcagaccagccatgaaataaacaactaggaggaaaagcaccggtaatacaaggtctagtggaagatcacttgtagt |
43531015 |
T |
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| Q |
201 |
tctagccacaaagtatgc |
218 |
Q |
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| T |
43531016 |
tctagccacaaagtatgc |
43531033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 54 - 206
Target Start/End: Complemental strand, 24128886 - 24128734
Alignment:
| Q |
54 |
gcatacctgagctgcaacaatgcagagaaaaactgtaagaatactaaggaaaaaggaccctgcactgagtctcagaccagccatgaaataaacaactagg |
153 |
Q |
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| T |
24128886 |
gcatacctgagctgcaatgatgcagaggaaaacagtaagaatggtgaggaaaaagggagcagcacttagtcttagaccagccatgaagtaaacaacaagg |
24128787 |
T |
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| Q |
154 |
aggaaaagcaccggtaatacaaggtctagtggaagatcacttgtagttctagc |
206 |
Q |
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| T |
24128786 |
agaaaaagcactggtaatatcaggtctaatggaaggtcgctcgttgttctagc |
24128734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 54 - 206
Target Start/End: Complemental strand, 24146850 - 24146698
Alignment:
| Q |
54 |
gcatacctgagctgcaacaatgcagagaaaaactgtaagaatactaaggaaaaaggaccctgcactgagtctcagaccagccatgaaataaacaactagg |
153 |
Q |
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||||||||||||||||| |||||||| ||||| |||||||| | || |||||||| | ||||| |||||||||||||||||||| |||||||| || |
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| T |
24146850 |
gcatacctgagctgcaatgatgcagaggaaaacagtaagaatggtgagaaaaaaggaggcagcacttagtctcagaccagccatgaagtaaacaacaagt |
24146751 |
T |
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| Q |
154 |
aggaaaagcaccggtaatacaaggtctagtggaagatcacttgtagttctagc |
206 |
Q |
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| T |
24146750 |
agaaaaagcactgataatatcaggtctaatggaaggtcgctcgttgttctagc |
24146698 |
T |
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