View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2108_low_8 (Length: 371)
Name: NF2108_low_8
Description: NF2108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2108_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 39498732 - 39498376
Alignment:
| Q |
1 |
tgtttatcaattattaggcccttttgtgttgctttgaaatttaacttatttaaagaacagaaaacctcttgtgacattgattgatggggggaagaaaatt |
100 |
Q |
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| T |
39498732 |
tgtttaacaattattaggcccttttgtgttgctttgaaatttaacttatttaaagaacagaaaacctcttgtgacattgattgatggggggaagaaaatt |
39498633 |
T |
|
| Q |
101 |
gatattcatttttatggtacagaccataaaaatgttagttatgttagtattttctctttatcgagagattgaacttaaaccggttgaagtagcaaacctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39498632 |
gatattcatttttatggtacagaccataaaaatgttagttatgttagtattttctctttatcgagagattgaacttaaaccggttgaagtagcaaacctt |
39498533 |
T |
|
| Q |
201 |
gtgaaattgatattctaatattagctgcccgtaaatttcaacttttgcaggttctataatgttactctcaacataggccaaccaccaaggccctattttc |
300 |
Q |
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| T |
39498532 |
gtgaaattgatattctaatattagctgcccgtaaatttcaacttttgcaggttctataatgttactctcaacataggccaaccaccaaggccctattttc |
39498433 |
T |
|
| Q |
301 |
ttgatgttgacaccggtagtgaactcacatggctccaatgtgatgctccttgttccc |
357 |
Q |
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| T |
39498432 |
ttgatgttgacaccggtagtgaactcacatggctccaatgtgatgctccttgttccc |
39498376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 248 - 357
Target Start/End: Complemental strand, 44375437 - 44375328
Alignment:
| Q |
248 |
caggttctataatgttactctcaacataggccaaccaccaaggccctattttcttgatgttgacaccggtagtgaactcacatggctccaatgtgatgct |
347 |
Q |
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| T |
44375437 |
caggttttataatgtgactatcaacattgggtacccaccaaggccatattttcttgatattgacactggtagcgacctaacatggcttcaatgtgatgca |
44375338 |
T |
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| Q |
348 |
ccttgttccc |
357 |
Q |
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|||||||||| |
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| T |
44375337 |
ccttgttccc |
44375328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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