View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21090_high_2 (Length: 466)
Name: NF21090_high_2
Description: NF21090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21090_high_2 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 16 - 459
Target Start/End: Complemental strand, 41646455 - 41646012
Alignment:
| Q |
16 |
attagaagagccatcatgtttgagattcaaaagataggacaaaagacttccatcttcactcgtcttttttgttactttgttgttgatgatattttgaaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41646455 |
attagaagagccatcatgtttgagattcaaaagataggacaaaagacttccatcttcactcgtcttttttgttactttgttgttgatgatattttgaaga |
41646356 |
T |
|
| Q |
116 |
aacatatcaccacttctatgcaatctcttcaatttatgcatcattccagtaatcacatgtagccaatgctgggatgggaacaaattatgaatggtgaaac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41646355 |
aacatatcaccacttctatgcaatctcttcaatttatgcatcattccagtaatcacatgtagccaatgctgggatgggaacaaattatgaatggtgaaac |
41646256 |
T |
|
| Q |
216 |
tctcagccaccgacatagattccttcatgaacaagatatatgcttctttgtccttacaattatcaccaaaagatgcccttgaagcgatgttatatgtcat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41646255 |
tctcagccaccgacatagattccttcatgaacaagatatatgcttctttgtccttacaattatcaccaaaagatgcccttgaagcgatgttatatgtcat |
41646156 |
T |
|
| Q |
316 |
agctaaaatttcatccgtgaagttgattgtagaccccttgtttatagaaagatatctaattaattttgatacctcttcctctcgaattgattggaatgat |
415 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41646155 |
agctaaaatttcatctgtgaagttgattgtagaccccttgtttatagaaagatatctaattaattttgatacctcttcctctcgaattgattggaatgat |
41646056 |
T |
|
| Q |
416 |
ctcacacgtttaacactcaacagctccaatgtgcatattcttcg |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41646055 |
ctcacacgtttaacactcaacagctccaatgtgcatatttttcg |
41646012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 27 - 454
Target Start/End: Complemental strand, 41653646 - 41653219
Alignment:
| Q |
27 |
catcatgtttgagattcaaaagataggacaaaagacttccatcttcactcgtcttttttgttactttgttgttgatgatattttgaagaaacatatcacc |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41653646 |
catcatgtttgagattcaaaagataggacaaaagacttccatcttcactcgtcttttttgttactttgttgttgatgatattttgaagaaacatatcacc |
41653547 |
T |
|
| Q |
127 |
acttctatgcaatctcttcaatttatgcatcattccagtaatcacatgtagccaatgctgggatgggaacaaattatgaatggtgaaactctcagccacc |
226 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||| |
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|
| T |
41653546 |
acttctatgcaatctcttcaatttatgcaccattccactaatcacatgtagccaatgctgggagggaaacaaattatgaatactgaaactctcagccaca |
41653447 |
T |
|
| Q |
227 |
gacatagattccttcatgaacaagatatatgcttctttgtccttacaattatcaccaaaagatgcccttgaagcgatgttatatgtcatagctaaaattt |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| || |||||||| |
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|
| T |
41653446 |
gacatagattccttcatgaacaagatatatgcttcattgtccttacaattatcaccaaaagatgcccttgaagtgatgctatatgtcaaagataaaattt |
41653347 |
T |
|
| Q |
327 |
catccgtgaagttgattgtagaccccttgtttatagaaagatatctaattaattttgatacctcttcctctcgaattgattggaatgatctcacacgttt |
426 |
Q |
| |
|
|||| || | |||||| ||||| || |||| ||||||| ||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
41653346 |
catctgtaaggttgatggtagatccagtgttaatagaaatatatctaattaatttcgacacctcttcctctcgaattgattggtatgatctcacacgttt |
41653247 |
T |
|
| Q |
427 |
aacactcaacagctccaatgtgcatatt |
454 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
41653246 |
aacactcaacagctccaatgtgcatatt |
41653219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 29 - 454
Target Start/End: Original strand, 41623367 - 41623789
Alignment:
| Q |
29 |
tcatgtttgagattcaaaagataggacaaaagacttccatcttcactcgtcttttttgttactttgttgttgatgatattttgaagaaacatatcaccac |
128 |
Q |
| |
|
|||| ||||||||||||||| | || | ||| ||||||||| |||| |||||| || || |||||||| ||||| || | ||||| ||||||||||| |
|
|
| T |
41623367 |
tcatctttgagattcaaaaggcaagatagaaggcttccatctccactggtctttgttattgctttgttg---atgatcttctcaagaaccatatcaccac |
41623463 |
T |
|
| Q |
129 |
ttctatgcaatctcttcaatttatgcatcattccagtaatcacatgtagccaatgctgggatgggaacaaattatgaatggtgaaactctcagccaccga |
228 |
Q |
| |
|
||||||||| | ||||||||||||| | ||||||| ||||||||||||||||||| || || || ||||||||| | || ||| ||||||| ||||| |
|
|
| T |
41623464 |
ttctatgcattgtcttcaatttatgtaccattccactaatcacatgtagccaatgttgagagggaaacaaattagggatattgacactctcaaccaccct |
41623563 |
T |
|
| Q |
229 |
catagattccttcatgaacaagatatatgcttctttgtccttacaattatcaccaaaagatgcccttgaagcgatgttatatgtcatagctaaaatttca |
328 |
Q |
| |
|
|| ||||||| |||||||||||| ||||||||| || || || ||||||||||||| |||||||||| ||||||||||||||||| | | |||||| |
|
|
| T |
41623564 |
tgtacattccttgatgaacaagataaatgcttcttgatcattgcatttatcaccaaaagttgcccttgaaatgatgttatatgtcatagatgatatttca |
41623663 |
T |
|
| Q |
329 |
tccgtgaagttgattgtagaccccttgtttatagaaagatatctaattaattttgatacctcttcctctcgaattgattggaatgatctcacacgtttaa |
428 |
Q |
| |
|
|| || | |||||| ||||| || |||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||| || |||||||| |
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|
| T |
41623664 |
tctgtaaggttgatagtagatccagtgtttatagaaatatatctaattaattttgacaactcttcctctcgaattgattggaatgatttcgcacgtttag |
41623763 |
T |
|
| Q |
429 |
cactcaacagctccaatgtgcatatt |
454 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
41623764 |
cactcaacaactccaatgtgcatatt |
41623789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 374 - 426
Target Start/End: Complemental strand, 41463701 - 41463649
Alignment:
| Q |
374 |
attaattttgatacctcttcctctcgaattgattggaatgatctcacacgttt |
426 |
Q |
| |
|
||||| |||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
41463701 |
attaaatttgatacctcttcttctctaattgattggaatgatctcacacgttt |
41463649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 20 - 454
Target Start/End: Complemental strand, 2432468 - 2432037
Alignment:
| Q |
20 |
gaagagccatcatgtttgagattcaaaagataggacaaaagacttccatcttcactcgtcttttttgttactttgttgttgatgatattttgaagaaaca |
119 |
Q |
| |
|
|||||||||| || |||||| ||||||||||||||||||||||||||||| || |||||| || | |||| | |||||||||||||| ||||| || |
|
|
| T |
2432468 |
gaagagccatgatcattgagactcaaaagataggacaaaagacttccatctccatcagtctttgtttt--cttt-tcgttgatgatattttcaagaatca |
2432372 |
T |
|
| Q |
120 |
tatcaccacttctatgcaatctcttcaatttatgcatcattccagtaatcacatgtagccaatgctgggatgggaacaaattatgaatggtgaaactctc |
219 |
Q |
| |
|
|||||||| | | || | | ||||||||||| | ||||||| |||||||||||| |||||| ||||| || ||||||||| | |||||||||| |
|
|
| T |
2432371 |
tatcaccagtcttgtgaattttcttcaatttacaaaccattccactaatcacatgtaaccaatgttgggagggaaacaaattagtgacactgaaactctc |
2432272 |
T |
|
| Q |
220 |
agccaccgacatagattccttcatgaacaagatatatgcttctttgtccttacaattatcaccaaaagatgcccttgaagcgatgttatatgtcatagct |
319 |
Q |
| |
|
|||| | |||| |||||| |||||| | |||||||||||| ||||| || ||||||||||||| |||||| ||| |||||||||| ||||| | |
|
|
| T |
2432271 |
tgccaactttatagtttccttgatgaacttggtatatgcttcttgctccttgcatttatcaccaaaagttgccctagaaatgatgttatattgcatagat |
2432172 |
T |
|
| Q |
320 |
aaaatttcatccgtgaagttgattgtagaccccttgtttatagaaagatatctaattaattttgatacctcttcctctcgaattgattggaatgatctca |
419 |
Q |
| |
|
|||||||||| |||| |||||| ||| || |||||||||||| | |||| |||| ||| | ||||||||||||| |||||||||||||||||||| |
|
|
| T |
2432171 |
aaaatttcatgagtgaggttgataatagttccagtgtttatagaaatacatcttgttaaatttaacacctcttcctctctaattgattggaatgatctca |
2432072 |
T |
|
| Q |
420 |
cacgtttaacactcaacagctccaatgtgcatatt |
454 |
Q |
| |
|
|||||||| |||||||||| || |||||||||||| |
|
|
| T |
2432071 |
cacgtttagcactcaacagttctaatgtgcatatt |
2432037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 35 - 450
Target Start/End: Original strand, 12439033 - 12439445
Alignment:
| Q |
35 |
ttgagattcaaaagataggacaaaagacttccatcttcactcgtcttttttgttactttgttgttgatgatattttgaagaaacatatcaccacttctat |
134 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||| |||||| ||||| | |||||| || || |||| ||||| | ||| ||| || ||| |
|
|
| T |
12439033 |
ttgagattcaaaagataggataaaagacttccatctccacctgtctttgttgttgcattgttg---ataatcttttcaagaatctcatctccagttttat |
12439129 |
T |
|
| Q |
135 |
gcaatctcttcaatttatgcatcattccagtaatcacatgtagccaatgctgggatgggaacaaatta-tgaatggtgaaactctcagccaccgacatag |
233 |
Q |
| |
|
| | | || |||||||| ||||||||| |||| ||||||||||||||||| || || |||| |||| |||| | ||||||||||||| | || |
|
|
| T |
12439130 |
ggattttcctcaatttaacaatcattccactaataacatgtagccaatgctgtgagggaaacagattagtgaaac-taaaactctcagccatctttgcag |
12439228 |
T |
|
| Q |
234 |
attccttcatgaacaagatatatgcttctttgtccttacaattatcaccaaaagatgcccttgaagcgatgttatatgtcatagctaaaatttcatccgt |
333 |
Q |
| |
|
|||||| ||||| | || ||||||||| ||||| || ||||||||||||| ||| |||||| |||||||||| || || ||||||||||| | |
|
|
| T |
12439229 |
tttccttgatgaatgtggtaaatgcttcttgctccttgcatttatcaccaaaagctgctcttgaaataatgttatatgacaaagataaaatttcatgact |
12439328 |
T |
|
| Q |
334 |
gaagttgattgtagaccccttgtttatagaaagatatctaattaattttgatacctcttcctctcgaattgattggaatgatctcacacgtttaacactc |
433 |
Q |
| |
|
|| ||||||| |||| || ||||| ||||| || | |||| || ||||| |||||||||| | |||||||||||||||||||||||| || |||| |
|
|
| T |
12439329 |
gaggttgattttagatccagtgtttgaagaaatatttttaataaaatttgacacctcttccttcctaattgattggaatgatctcacacggttcgtactc |
12439428 |
T |
|
| Q |
434 |
aacagctccaatgtgca |
450 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12439429 |
aacagctccaatgtgca |
12439445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 5023004 - 5023057
Alignment:
| Q |
17 |
ttagaagagccatcatgtttgagattcaaaagataggacaaaagacttccatct |
70 |
Q |
| |
|
|||| ||||||||| | ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5023004 |
ttaggagagccatcgtctttgagattcaaaagataggacagtagacttccatct |
5023057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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