View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21090_high_3 (Length: 440)
Name: NF21090_high_3
Description: NF21090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21090_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 82 - 415
Target Start/End: Complemental strand, 13555119 - 13554786
Alignment:
| Q |
82 |
atgttatgcttctgttccagcactatgcgtcagcttgtacgaaactgtatgcaatgaggccaggcaagatgccaatgcttgcttgaatcttttaaaaact |
181 |
Q |
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| T |
13555119 |
atgttatgcttctgttccagcactatgcgtcagcttgtatgaaactgtatgcaatgaggcgaggcaagatgccaatgcttgcttgaatcttttaaaaact |
13555020 |
T |
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| Q |
182 |
gactcaaaaatcacctcagccacaaattatcatgatctctccaagtctatcgtggtttttgcatttaaccaggggttacaggctcaagcttatcttttaa |
281 |
Q |
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| T |
13555019 |
gactcaaaaatcacctcagccacaaattatcatgacctctccaagtctatcgtggtttttgcatttaaccaagggttacaggctcaagcttatcttttaa |
13554920 |
T |
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| Q |
282 |
aagtggcaaaacaatttcccagtgatcaagctgttagtcaatgtgcaaatgaattttacataatgagtattagatattttggaaatgcacttatttatgt |
381 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| |
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| T |
13554919 |
aagtggcaaaacaatttcccagtgatgaagctgttagtcaatgtgcaaatgaattttacataatgagtattagatattttggaaatgcaatgattgatgt |
13554820 |
T |
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| Q |
382 |
gggtaaagatcctcaaaatgcaaaaaatgatgtt |
415 |
Q |
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| T |
13554819 |
ggataaagatcctcaaaatgcaaaaaatgatgtt |
13554786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 93 - 425
Target Start/End: Complemental strand, 13559235 - 13558897
Alignment:
| Q |
93 |
ctgttccagcactatgcgtcagcttgtacgaaactgtatgcaatgaggccaggcaagatgccaatgcttgcttgaatcttttaaaaactgactcaaaaat |
192 |
Q |
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| T |
13559235 |
ctgtaccagcacactgtgtcagtttgtatgaaactgtatgcagtgaggccaggcaagatgccaatgcttgcttgaatcttttaaaaactgacccaaaaat |
13559136 |
T |
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| Q |
193 |
cacctcagccacaaattatcatgatctctccaagtctatcgtggtttttgcatttaaccaggggttacaggctcaagcttatcttttaaaagtggcaaaa |
292 |
Q |
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| T |
13559135 |
cacctcagccacaaattatcatgacctctccaaatctatcttgagttttgcatttaacaaggggctagaggatcaagcttatcttttaaaagtggcaaaa |
13559036 |
T |
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| Q |
293 |
caatttcccagtgatcaagctgttagtcaatgtgcaaatgaattttacataatgagtattagatattttggaaatgcacttatttatgt------gggta |
386 |
Q |
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| T |
13559035 |
caatttcccaataatcaagctattggtcaatgtgcaaatgtattttacaaaacgagtattgcatattttggatatgcaatgattgatgtggataaggtta |
13558936 |
T |
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| Q |
387 |
aagatcctcaaaatgcaaaaaatgatgttcaaagtgctg |
425 |
Q |
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| T |
13558935 |
aggatcctcaaaatgcaaaaaatgatgttcaaactgctg |
13558897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 14173132 - 14173071
Alignment:
| Q |
161 |
tgcttgaatcttttaaaaactgactcaaaaatcacctcagccacaaattatcatgatctctc |
222 |
Q |
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| T |
14173132 |
tgcttgaatattttgaaaactgacccaaaaatcacctcagccacaaattaccatgacctctc |
14173071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 14177668 - 14177607
Alignment:
| Q |
161 |
tgcttgaatcttttaaaaactgactcaaaaatcacctcagccacaaattatcatgatctctc |
222 |
Q |
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| T |
14177668 |
tgcttgaatattttgaaaactgacccaaaaatcacctcagccacaaattaccatgacctctc |
14177607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 14166301 - 14166239
Alignment:
| Q |
161 |
tgcttgaatcttttaaaaactgactcaaaaatcacctcagccacaaattatcatgatctctcc |
223 |
Q |
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||||||||| |||| ||||||||| |||||||||||||||| || ||||| ||||| |||||| |
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| T |
14166301 |
tgcttgaatattttgaaaactgacccaaaaatcacctcagcgacgaattaccatgacctctcc |
14166239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 13505912 - 13505964
Alignment:
| Q |
164 |
ttgaatcttttaaaaactgactcaaaaatcacctcagccacaaattatcatga |
216 |
Q |
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| T |
13505912 |
ttgaatcttttgaaaactgacccaaatatcgccttagccacaaattatcatga |
13505964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 13528555 - 13528614
Alignment:
| Q |
164 |
ttgaatcttttaaaaactgactcaaaaatcacctcagccacaaattatcatgatctctcc |
223 |
Q |
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||||||||| | ||||||||| |||| ||| ||| |||||||||||||||||| |||||| |
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| T |
13528555 |
ttgaatcttatgaaaactgacccaaatatccccttagccacaaattatcatgacctctcc |
13528614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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