View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21090_high_8 (Length: 227)
Name: NF21090_high_8
Description: NF21090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21090_high_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 24743139 - 24743357
Alignment:
| Q |
9 |
atcctcacaaccagcataatatgaccttatattgcagcatagaacacaaggacaatccactatcatggggaaatcatagtaaaccatatagttcaccgag |
108 |
Q |
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| T |
24743139 |
atcctcacaaccaacataatatgaccttatattgcagcatagaacacaaggacaatccactatcatggggaaatcatagtcaaccatatagctcaccgag |
24743238 |
T |
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| Q |
109 |
ctnnnnnnntgaagcaacactcattagaaaaacaacaaagtacaaatatcttatctttaatgattaataaattctacttccaaacacttaactacccatg |
208 |
Q |
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| T |
24743239 |
ctaaaaaaatgaagcaacactcattagaaaaacaacaaagtacaaatatcttatctttaatgattaataaattctacttccaaacacttaactacccatg |
24743338 |
T |
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| Q |
209 |
gaatccaaatacaccagac |
227 |
Q |
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| T |
24743339 |
gaattcaaatacaccagac |
24743357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 32548276 - 32548495
Alignment:
| Q |
7 |
ttatcctcacaaccagcataatatgaccttatattgcagcatagaacacaaggacaatccactatcatgggg--aaatcatagtaaaccatatagttcac |
104 |
Q |
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| T |
32548276 |
ttatcctcacaaccaacataggatgacctcatactgcagcatagaacacaaggacagtccactatcaggggggaaaattatagtcaatcatatagctcac |
32548375 |
T |
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| Q |
105 |
cgagctnnnnnnntgaagcaacactcattagaaaaacaacaaagtacaaa-tatcttatctttaatgattaataaattctacttccaaacacttaactac |
203 |
Q |
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| T |
32548376 |
tgatctaaaaaa-tgaagcaagactcgttagaaaaacaacagagtataaaatattttatctttaatgattaataaattccacttctgaacacttaactac |
32548474 |
T |
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| Q |
204 |
ccatggaatccaaatacacca |
224 |
Q |
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| T |
32548475 |
ccatggaattcaagtacacca |
32548495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 41532057 - 41532145
Alignment:
| Q |
23 |
cataatatgaccttatattgcagcatagaacacaaggacaatccactatcatg-gggaaatcatagtaaaccatatagttcaccgagct |
110 |
Q |
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| T |
41532057 |
catagtatgacctcatactgcagcatataacacaaggacagtcgactatcaggagggaaatcttagtcaaccatatagctcaccaagct |
41532145 |
T |
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