View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21090_low_10 (Length: 334)

Name: NF21090_low_10
Description: NF21090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21090_low_10
NF21090_low_10
[»] chr7 (4 HSPs)
chr7 (18-318)||(30119700-30120000)
chr7 (148-304)||(30130708-30130867)
chr7 (53-174)||(30165861-30165982)
chr7 (27-228)||(30124833-30125034)
[»] chr8 (7 HSPs)
chr8 (53-114)||(43164671-43164732)
chr8 (53-114)||(41310993-41311054)
chr8 (275-303)||(12195907-12195935)
chr8 (275-303)||(12200922-12200950)
chr8 (275-303)||(12440335-12440363)
chr8 (275-303)||(12445350-12445378)
chr8 (275-303)||(15349478-15349506)
[»] chr4 (4 HSPs)
chr4 (55-116)||(48863631-48863692)
chr4 (275-304)||(48863848-48863877)
chr4 (274-302)||(48734865-48734893)
chr4 (55-107)||(49040795-49040847)


Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 30120000 - 30119700
Alignment:
Q  18 tattagtgcatggattgtggacatggatgtagtggagatatgggtaatgcaagaatatgcagtgtattcatcttggattaagactcttgttttttctata 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30120000 tattagtgcatggattgtggacatggatgtagtggagatatgggtaatgcaagaatatgcagtgcattcatcttggattaagactcttgttttttctata 30119901  T
Q  118 cgtcctgatccggacttctttctagtatattttacaaattgtggtgatatagttggaacagatggtcatgatgaattggtgaagtttaattacaaaggcc 217  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30119900 cgtcctgatccggacttcttccttgtatattttacaaattgtggtgatatagttggaacagatggtcatgatgaattggtgaagtttaattacaaaggcc 30119801  T
Q  218 agctgctagagaatctctcatatcatagctgtttttcgggtagatccaaaatggtcgtgtatacagagtctctgctttcactccctactggcgtttgatt 317  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30119800 agctgctagagaatctctcatatcattgctgtttttcaggtagatccaaaatggtcgtgtatacagagtctctgctttcactccctactggcgttagatt 30119701  T
Q  318 g 318  Q
    |    
T  30119700 g 30119700  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 148 - 304
Target Start/End: Complemental strand, 30130867 - 30130708
Alignment:
Q  148 tttacaaattgtggtgatatagttggaacagatggtcatga---tgaattggtgaagtttaattacaaaggccagctgctagagaatctctcatatcata 244  Q
    ||||||||||| |||||||||||||||| || || ||||||   || ||||  |||||||||| | ||||| || ||||||||| ||  ||| |||||||    
T  30130867 tttacaaattgcggtgatatagttggaatagttgatcatgaacgtggattgaagaagtttaataataaaggacacctgctagagcatgactcctatcata 30130768  T
Q  245 gctgtttttcgggtagatccaaaatggtcgtgtatacagagtctctgctttcactcccta 304  Q
      |||||||| |  |||||| ||||||  ||||||||||||||||| |||||| ||||||    
T  30130767 tttgtttttcagaaagatcccaaatggcggtgtatacagagtctcttctttcattcccta 30130708  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 30165861 - 30165982
Alignment:
Q  53 agatatgggtaatgcaagaatatgcagtgtattcatcttggattaagactcttgttttttctatacgtcctgatccggacttctttctagtatattttac 152  Q
    |||||||||| ||||||||||| |||||| |||||||||||| || |||||||| ||||||| | | ||||  || ||| || | || | |||  |||||    
T  30165861 agatatgggtgatgcaagaatacgcagtgcattcatcttggactacgactcttgatttttcttttcatcctcctctggatttttctccaatatgctttac 30165960  T
Q  153 aaattgtggtgatatagttgga 174  Q
    |||||| |||||||||||||||    
T  30165961 aaattgcggtgatatagttgga 30165982  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 228
Target Start/End: Complemental strand, 30125034 - 30124833
Alignment:
Q  27 atggattgtggacatggatgtagtggagatatgggtaatgcaagaatatgcagtgtattcatcttggattaagactcttgttttttctatacgtcctgat 126  Q
    ||||||| | || ||||||| |||  ||||| |||| ||||| ||||| ||| || |||| | ||||| |   ||||||||||||||||| | ||||| |    
T  30125034 atggattcttgagatggatgcagttaagatacgggtgatgcatgaatacgcaatggattcctgttggactcgaactcttgttttttctatgcatcctgct 30124935  T
Q  127 ccggacttctttctagtatattttacaaattgtggtgatatagttggaacagatggtcatgatgaattggtgaagtttaattacaaaggccagctgctag 226  Q
    ||| |||| |  | | |||  |||||||| |  ||||||||||||||||| ||| ||   | || ||| |||||||||||| ||||||| ||||||||||    
T  30124934 ccgcacttttccccaatatcctttacaaaattcggtgatatagttggaactgattgtaggggtggattcgtgaagtttaatgacaaaggacagctgctag 30124835  T
Q  227 ag 228  Q
    ||    
T  30124834 ag 30124833  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 43164732 - 43164671
Alignment:
Q  53 agatatgggtaatgcaagaatatgcagtgtattcatcttggattaagactcttgttttttct 114  Q
    |||||||||||||||||||||| || ||| ||||||||||||  |||||| ||| |||||||    
T  43164732 agatatgggtaatgcaagaatacgctgtgcattcatcttggaccaagacttttgatttttct 43164671  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 41311054 - 41310993
Alignment:
Q  53 agatatgggtaatgcaagaatatgcagtgtattcatcttggattaagactcttgttttttct 114  Q
    |||||||||| ||||||||||| ||| |  |||||||||||| ||||||| ||| |||||||    
T  41311054 agatatgggtgatgcaagaatacgcaatacattcatcttggactaagacttttgatttttct 41310993  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 303
Target Start/End: Original strand, 12195907 - 12195935
Alignment:
Q  275 tgtatacagagtctctgctttcactccct 303  Q
    |||||||||||||||||||||||||||||    
T  12195907 tgtatacagagtctctgctttcactccct 12195935  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 303
Target Start/End: Original strand, 12200922 - 12200950
Alignment:
Q  275 tgtatacagagtctctgctttcactccct 303  Q
    |||||||||||||||||||||||||||||    
T  12200922 tgtatacagagtctctgctttcactccct 12200950  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 303
Target Start/End: Original strand, 12440335 - 12440363
Alignment:
Q  275 tgtatacagagtctctgctttcactccct 303  Q
    |||||||||||||||||||||||||||||    
T  12440335 tgtatacagagtctctgctttcactccct 12440363  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 303
Target Start/End: Original strand, 12445350 - 12445378
Alignment:
Q  275 tgtatacagagtctctgctttcactccct 303  Q
    |||||||||||||||||||||||||||||    
T  12445350 tgtatacagagtctctgctttcactccct 12445378  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 303
Target Start/End: Original strand, 15349478 - 15349506
Alignment:
Q  275 tgtatacagagtctctgctttcactccct 303  Q
    |||||||||||||||||||||||||||||    
T  15349478 tgtatacagagtctctgctttcactccct 15349506  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 48863631 - 48863692
Alignment:
Q  55 atatgggtaatgcaagaatatgcagtgtattcatcttggattaagactcttgttttttctat 116  Q
    |||||||| ||| ||||||| | |||| |||||||||||||||| ||||||||  |||||||    
T  48863631 atatgggtgatggaagaatacggagtgcattcatcttggattaaaactcttgtgctttctat 48863692  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 304
Target Start/End: Original strand, 48863848 - 48863877
Alignment:
Q  275 tgtatacagagtctctgctttcactcccta 304  Q
    ||||||||||||||||||||||||||||||    
T  48863848 tgtatacagagtctctgctttcactcccta 48863877  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 302
Target Start/End: Complemental strand, 48734893 - 48734865
Alignment:
Q  274 gtgtatacagagtctctgctttcactccc 302  Q
    |||||||||||||||||||||||||||||    
T  48734893 gtgtatacagagtctctgctttcactccc 48734865  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 49040847 - 49040795
Alignment:
Q  55 atatgggtaatgcaagaatatgcagtgtattcatcttggattaagactcttgt 107  Q
    |||||||| ||| ||||||||| |||| |||||||||||||||| | ||||||    
T  49040847 atatgggtgatggaagaatatggagtgcattcatcttggattaaaattcttgt 49040795  T

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