View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21090_low_11 (Length: 326)
Name: NF21090_low_11
Description: NF21090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21090_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 171 - 306
Target Start/End: Complemental strand, 14965420 - 14965285
Alignment:
| Q |
171 |
cacgagctaattaatgaagaaatttgattcaaatggctagctaatctcagaattacacaatcgtcaacatgatagattgttcatcacgtcattttctcta |
270 |
Q |
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| T |
14965420 |
cacgagctaattaatgaagaaatttgattcaaatgactagctaatctcagaattacacaatcgtcaacatgatagattgttcatcacgtcgttttctcta |
14965321 |
T |
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| Q |
271 |
agtagtttcaaatgtgtgcatttgtgaaattctcac |
306 |
Q |
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| T |
14965320 |
agtagtttcaaatgtgtgcatttatgaaattctcac |
14965285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 14965536 - 14965410
Alignment:
| Q |
18 |
aaaaacacatggatataatttatctatacaagtacgcaatatnnnnnnncaaaagaaatgttaaaagcatgcaaagcatgctataataagcatttgtaac |
117 |
Q |
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| T |
14965536 |
aaaaacacatggatataatttatctatacaagtacgcaatataaaaaaacaaaagaaatgttaaaagcatgc---------tataataagcatttgtaac |
14965446 |
T |
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| Q |
118 |
aaataaagaagtgtgttggcctaaacacgagctaat |
153 |
Q |
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| T |
14965445 |
aaataaagaagtgtgttggcctaaacacgagctaat |
14965410 |
T |
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