View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21090_low_2 (Length: 526)
Name: NF21090_low_2
Description: NF21090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21090_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 15 - 516
Target Start/End: Original strand, 36168014 - 36168510
Alignment:
| Q |
15 |
tttagttcaagttaattaacaagaaatgccttggtcacgtcagagttttagaagaatgtgatatgattcatttggtttaaaggaaaaatatctttcataa |
114 |
Q |
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| T |
36168014 |
tttagtccaagttaattaataagaaatgccttggtcacgtcagagttttagaagaatgtgatatgattcatttggtttaaaggaaaaatatctttcataa |
36168113 |
T |
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| Q |
115 |
agattatgggccctaaaactggccgtgaaataatcaatttattgacctcctctccatatcataagtacaaaattaccacattcatcatttcataactaac |
214 |
Q |
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| T |
36168114 |
agattatgggccctaaaactggccgtgaaataatcaatttattgacctcctctccatatcataagtacaaaattaccacattcatcatttcataactaac |
36168213 |
T |
|
| Q |
215 |
ccaatacttatgtaaccatcattttagggtaggttactttgtataccttgcttagaaatgaaggcttccttgtgtccttgttgacattttgaacttcata |
314 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36168214 |
ccaatatttatgtaaccatcattttagggtaggttactttgtataccttgcttagaaatgaaggcttccttgtgtccttcttgacattttgaacttcata |
36168313 |
T |
|
| Q |
315 |
tttattggaccggattggatttgactgcaagtgcccatgcagcataatgtagaggagacaagtagaatctcacgatgtaataactataatgattactatc |
414 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36168314 |
tttattggacc-----ggatttgactgcaagtgcccatgcagcataatgtagaggagacaagtagaatctgacgatgtaataactataatgattactatc |
36168408 |
T |
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| Q |
415 |
acatggtccaaattatgctaaatttgctttgcaaatcacatgttaaatttgttttgcaaatcaaatgaaagcttatcagcaattgtttatgtataatctg |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36168409 |
acatggtccaaattatgctaaatttgctttgcaaatcacatgttaaatttgttttgcaaatcaaatgaaagcttatcagcaattgtttatgtataatctg |
36168508 |
T |
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