View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21090_low_5 (Length: 431)
Name: NF21090_low_5
Description: NF21090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21090_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 25 - 409
Target Start/End: Original strand, 31206234 - 31206618
Alignment:
| Q |
25 |
gagattcgattccacctcttgatggaggaaaagaagttgttttcgagagaattttctcaaattgttttaggatgtggatatttgaacccgtgatgtgtga |
124 |
Q |
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| T |
31206234 |
gagattcgattccacctctcgatggaggaaaaaaagttgttttcgagagaattttctcaaattgttttaggatgtggatatttgaacccgggatgtgtga |
31206333 |
T |
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| Q |
125 |
gattccaacaagggttgtatggcataaagaaaataagaaccaaattgcaaacattattatacttacatttaagcacttgccacaagcatatttgcttagc |
224 |
Q |
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| T |
31206334 |
gattccaacaagggttgtatggcataaagaaaataagaaccaaattgcaaacattattatacttacatttaagcacttgccacaagcatatttgcttagc |
31206433 |
T |
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| Q |
225 |
catataccacaaaaggcagcccaaccatatttgcttcgccatgacaatgatttgttcccatcttgagatgcacataacacacctgctgtgttcaagttcc |
324 |
Q |
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| T |
31206434 |
catataccacaaaaggcagcccaaccatatttgcttcgccatgacaatgatttgttcccatcttgagatgcacataacacacctgctgtgttcaagttcc |
31206533 |
T |
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| Q |
325 |
acttgtttcctataccttgtttagttgttggagaattgaaagaacgatatgtagcattcacattgatttctttttgagctgaggc |
409 |
Q |
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| T |
31206534 |
acttgtttcctataccttgtttagttgttggagaattgaaagaacgatatgtagcattcacattgatttcactttgagctgaggc |
31206618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 231 - 409
Target Start/End: Original strand, 31175103 - 31175281
Alignment:
| Q |
231 |
ccacaaaaggcagcccaaccatatttgcttcgccatgacaatgatttgttcccatcttgagatgcacataacacacctgctgtgttcaagttccacttgt |
330 |
Q |
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| T |
31175103 |
ccacaaaaggcagcccaaccatatttgcttcgccatgacaatggtttgttaccatcttgagctgcacagaacacacctgatgtgttcaagttccacttgt |
31175202 |
T |
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| Q |
331 |
ttcctataccttgtttagttgttggagaattgaaagaacgatatgtagcattcacattgatttctttttgagctgaggc |
409 |
Q |
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|||||||||||||||||||| || |||||||||| ||||||||||| |||||||| || | ||||||||||||| |
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| T |
31175203 |
ttcctataccttgtttagtttgtgttaaattgaaagactgatatgtagcagtcacattgtttgcactttgagctgaggc |
31175281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 231 - 323
Target Start/End: Original strand, 31192601 - 31192693
Alignment:
| Q |
231 |
ccacaaaaggcagcccaaccatatttgcttcgccatgacaatgatttgttcccatcttgagatgcacataacacacctgctgtgttcaagttc |
323 |
Q |
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| T |
31192601 |
ccacaaaaagcagtcaaaccatatttgcttggccatgaaaatgatttgtttccatcctgagctgcacataatacacctgatgtgttcaagttc |
31192693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 31143295 - 31143389
Alignment:
| Q |
231 |
ccacaaaaggcagcccaaccatatttgcttcgccatgacaatgatttgttcccatcttgagatgcacataacacacctgctgtgttcaagttcca |
325 |
Q |
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| T |
31143295 |
ccacagaaggcagcccaaccaaattcactacgccatgacaatgatttgttcccatcctgagctgcacaaaatacaccagatgtgttcaagttcca |
31143389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 31175048 - 31175085
Alignment:
| Q |
182 |
tatacttacatttaagcacttgccacaagcatatttgc |
219 |
Q |
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| T |
31175048 |
tatacatacatttaagcacttgccacaagcagatttgc |
31175085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 35939848 - 35939888
Alignment:
| Q |
231 |
ccacaaaaggcagcccaaccatatttgcttcgccatgacaa |
271 |
Q |
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| T |
35939848 |
ccacaaaaggcagtccaaccatatttgctacgccatgacaa |
35939888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 35929122 - 35929162
Alignment:
| Q |
231 |
ccacaaaaggcagcccaaccatatttgcttcgccatgacaa |
271 |
Q |
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| T |
35929122 |
ccacagaaggcagtccaaccatatttgctacgccatgacaa |
35929162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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