View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21090_low_6 (Length: 381)
Name: NF21090_low_6
Description: NF21090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21090_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 324
Target Start/End: Complemental strand, 33069081 - 33068765
Alignment:
| Q |
7 |
tcgaagaatatttgtgaggattaaaaaactattaaattaagtaatgactaaatttagaaggttcatattttgtagggatcaaaacatatgcaagtatggg |
106 |
Q |
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| T |
33069081 |
tcgaaaaatatttgtgaggattaaaaaactattaaattaaataatgactaaacttaaaatgttcatattttgtagggaccaaaacatatgcaagtatgtg |
33068982 |
T |
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| Q |
107 |
cccctttttattttgtacatggttagcggaaataaaatttgattatgaattttttctattttaactctaataaaggggaagataaaaattttgtac-nnn |
205 |
Q |
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| T |
33068981 |
cccctttttattttgtacatggttagcggaaataaaatttgattatgaa--ttttctattttaactctaataaaggggaagatgaaaattttgtacaaaa |
33068884 |
T |
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| Q |
206 |
nnnnnnggggagatgaaaactaatagtcaatttttattgttttatttgatcttatctattcgtataagttttgtgttacggtttagaagaatttatgaaa |
305 |
Q |
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| T |
33068883 |
aaaaaaggggagataaaaactaagagtcaatttttactgttttatttgatcttatctactcgcataagttttgtgttacggtttgaaagaatttatgaaa |
33068784 |
T |
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| Q |
306 |
atagtttatgaaagttttc |
324 |
Q |
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| T |
33068783 |
atagtttatgaaagttttc |
33068765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 308
Target Start/End: Original strand, 34882353 - 34882414
Alignment:
| Q |
247 |
ttatttgatcttatctattcgtataagttttgtgttacggtttagaagaatttatgaaaata |
308 |
Q |
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| T |
34882353 |
ttatttcatcttatctactagtataagttttgttggactgtttaggagaatttatgaaaata |
34882414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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