View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21090_low_7 (Length: 374)
Name: NF21090_low_7
Description: NF21090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21090_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Original strand, 11078769 - 11079117
Alignment:
| Q |
19 |
ccatattccataaaaattctataccaaaattagttaaacatgaaggacactatagttctctaccctgcctttggaagtggacacttaatgtccatggttg |
118 |
Q |
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| T |
11078769 |
ccatattccataaaaattctataccaaaattagttaaacatgaaggacactatagttctctaccctgcctttggaagtggacacttaatgtccatggttg |
11078868 |
T |
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| Q |
119 |
agttaggaaaactcatactaactcaccacccttcattttccatcaaaattctcattctcacaccccccaatcaagacaccaacaccattaacgtttccat |
218 |
Q |
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| T |
11078869 |
agttaggaaaactcatactaactcaccacccttcattttccatcaaaattctcattctcacaccccccaaccaagacaccaacaccattaacgtttccac |
11078968 |
T |
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| Q |
219 |
atctcaatatatatcatctatctcaaacaaatttccctctatcaacttccactatattccttcaatttcattcacttttactcttccacctcatttacaa |
318 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11078969 |
gtctcaatatatatcatctgtctcaaacaaatttccctctatcaacttccactatattccttcaatttcattcacttttactcttccacctcatttacaa |
11079068 |
T |
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| Q |
319 |
accctagaactctctcctcgtagcaaccaccatgttcatcatattcttc |
367 |
Q |
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| T |
11079069 |
accctagaactctctcctcgtagcaaccaccatgttcatcatattcttc |
11079117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 54 - 185
Target Start/End: Original strand, 10981424 - 10981555
Alignment:
| Q |
54 |
aaacatgaaggacactatagttctctaccctgcctttggaagtggacacttaatgtccatggttgagttaggaaaactcatactaactcaccacccttca |
153 |
Q |
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| T |
10981424 |
aaacatgaaggacactatagttttgtatcctgctcttggtagtggacacttgatgcctatggttgagttaggaaaactaatatcaactcaccacccttca |
10981523 |
T |
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| Q |
154 |
ttttccatcaaaattctcattctcacaccccc |
185 |
Q |
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| T |
10981524 |
ttttccatcacaattctcattcttacaccccc |
10981555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 57 - 188
Target Start/End: Original strand, 10967519 - 10967650
Alignment:
| Q |
57 |
catgaaggacactatagttctctaccctgcctttggaagtggacacttaatgtccatggttgagttaggaaaactcatactaactcaccacccttcattt |
156 |
Q |
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||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||||| |||| ||||| ||||||||| ||||||| |||||||||||| |
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| T |
10967519 |
catgaaggacactattgttctctaccctgctcttggtagtggacacttgatgtccatgattgaattaggcaaactcatagtaactcatcacccttcattt |
10967618 |
T |
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| Q |
157 |
tccatcaaaattctcattctcacaccccccaa |
188 |
Q |
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| T |
10967619 |
ttcatcacaattttaattcttacaccacccaa |
10967650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 54 - 187
Target Start/End: Original strand, 11001657 - 11001790
Alignment:
| Q |
54 |
aaacatgaaggacactatagttctctaccctgcctttggaagtggacacttaatgtccatggttgagttaggaaaactcatactaactcaccacccttca |
153 |
Q |
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||||||||| |||||||||||||| || ||||| | || ||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||| |
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| T |
11001657 |
aaacatgaatgacactatagttctatatcctgctctaggtagtggacacttaatgtccatgattgaattaggaaaactaatattaactcaccaccctttg |
11001756 |
T |
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| Q |
154 |
ttttccatcaaaattctcattctcacacccccca |
187 |
Q |
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|||||||| |||||||| ||||| ||||| |||| |
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| T |
11001757 |
ttttccattaaaattctaattcttacaccaccca |
11001790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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