View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21090_low_9 (Length: 345)
Name: NF21090_low_9
Description: NF21090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21090_low_9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 136 - 345
Target Start/End: Original strand, 53479362 - 53479574
Alignment:
| Q |
136 |
ttaaaattctaaggcgaaaataataagaatgttttttcccctcaaaaacaatgtttttgtttgtagtcaattaaaaagttgtgattggtg---ttacccn |
232 |
Q |
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| T |
53479362 |
ttaaaattctaaggcgaaaataataagaatgttttttcccctcaaaaacaatgtttttgtttgtagtcaattaaaaagttgtgattggtggtgttaccca |
53479461 |
T |
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| Q |
233 |
nnnnnngttgtgactaatgtaattttcacgatgtttacagtttttgaggggactggactcaatcgtgcaaatgtgaaaataaagaggtctgataatactg |
332 |
Q |
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| T |
53479462 |
aaaaaagttgtgactaatgtaattttcacgatgtttacagtttttgaggggattggactcaatcgtgcaaatgtgaaaataaagaggtctgataatactg |
53479561 |
T |
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| Q |
333 |
ttgtagttgcatt |
345 |
Q |
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| T |
53479562 |
ttgtagttgcatt |
53479574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 53479199 - 53479331
Alignment:
| Q |
10 |
attattctactctaattctaatgaatga---cttgatgaacctattctaaatttaattgcaattcatttttctcccaaaaaattcgttctgtgttttggt |
106 |
Q |
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| T |
53479199 |
attattctactctaattctaatgaatgaaaacttgatgaacctattctaaatttaattgcaattcatttttctcccaaaaaattcgttctgtgttttcgt |
53479298 |
T |
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| Q |
107 |
tatgnnnnnnnnatggaagattctttaggttaa |
139 |
Q |
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| T |
53479299 |
tatgttttttttatggaagattctttaggttaa |
53479331 |
T |
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