View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21091_high_2 (Length: 338)
Name: NF21091_high_2
Description: NF21091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21091_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 2 - 319
Target Start/End: Original strand, 28733613 - 28733930
Alignment:
| Q |
2 |
tgaaggcaagattattggagagagagacaaaactacaaaatataactgaagagaacaatacacttaagatggaaataaagagagaggagttagagaagaa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733613 |
tgaaggcaagattattggagagagagacaaaactacaaaatataactgaagagaacaatacacttaagatggaaataaagagagaggagttagagaagaa |
28733712 |
T |
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| Q |
102 |
taaaatcatggatgaggctgttgcttccgctgaggcagcaagggccgcggagcgagaggctttgacaaaactcagctacataacagaagaagctgatgaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733713 |
taaaatcatggatgaggctgttgcttccgctgaggcagcaagggccgcggagcgagaggctttgacaaaactcagctacataacagaagaagctgatgaa |
28733812 |
T |
|
| Q |
202 |
agtaaccgaatgataacacgtgtaactgaggagttagatactgcacaggcgtcaaatttggaattagaggctgaattaaggagattgaaagtacagtcag |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28733813 |
agtaaccgaatgataacacgtgtaactgaggagttagatactgcacaggcgtcaaatttggagttagaggctgaattaaggagattgaaagtacagtcag |
28733912 |
T |
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| Q |
302 |
atcaatggaggaaagcag |
319 |
Q |
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|||||||||||||||||| |
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| T |
28733913 |
atcaatggaggaaagcag |
28733930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 319
Target Start/End: Original strand, 22110677 - 22110860
Alignment:
| Q |
136 |
gcagcaagggccgcggagcgagaggctttgacaaaactcagctacataacagaagaagctgatgaaagtaaccgaatgataacacgtgtaactgaggagt |
235 |
Q |
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||||||||||| || ||| |||||||||||| ||||| ||||| ||| |||||||| ||| |||||||| ||| | | ||||||||||| || |
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| T |
22110677 |
gcagcaagggctgcagagaaagaggctttgacgaaacttagctatgtaatggaagaagcggataaaagtaacagaagagtggctcgtgtaactgaacagc |
22110776 |
T |
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| Q |
236 |
tagatactgcacaggcgtcaaatttggaattagaggctgaattaaggagattgaaagtacagtcagatcaatggaggaaagcag |
319 |
Q |
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| T |
22110777 |
tagatgctgctcaggctgcgaattcagagctggaagccgaattaaggagattgaaagttcagtctgatcagtggagaaaagcag |
22110860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 319
Target Start/End: Complemental strand, 40583912 - 40583729
Alignment:
| Q |
136 |
gcagcaagggccgcggagcgagaggctttgacaaaactcagctacataacagaagaagctgatgaaagtaaccgaatgataacacgtgtaactgaggagt |
235 |
Q |
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||||||||||| || ||| |||||||||||| ||||| ||||| ||| |||||||| ||| |||||||| ||| | | ||||||||||| || |
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| T |
40583912 |
gcagcaagggctgcagagaaagaggctttgacgaaacttagctatgtaatggaagaagcggataaaagtaacagaagagtggctcgtgtaactgaacagc |
40583813 |
T |
|
| Q |
236 |
tagatactgcacaggcgtcaaatttggaattagaggctgaattaaggagattgaaagtacagtcagatcaatggaggaaagcag |
319 |
Q |
| |
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||||| |||| ||||| | |||| || | || || |||||||||||||||||||| ||||| ||||| ||||| ||||||| |
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| T |
40583812 |
tagatgctgctcaggctgcgaattcagagctggaagccgaattaaggagattgaaagttcagtctgatcagtggagaaaagcag |
40583729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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