View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21091_high_4 (Length: 280)

Name: NF21091_high_4
Description: NF21091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21091_high_4
NF21091_high_4
[»] chr8 (3 HSPs)
chr8 (1-264)||(9061490-9061757)
chr8 (1-48)||(9061758-9061805)
chr8 (1-48)||(27018616-27018663)
[»] chr5 (7 HSPs)
chr5 (1-264)||(2416548-2416815)
chr5 (1-264)||(33826649-33826916)
chr5 (8-264)||(39878552-39878812)
chr5 (1-264)||(39348310-39348577)
chr5 (1-48)||(2416500-2416547)
chr5 (1-48)||(33826601-33826648)
chr5 (1-48)||(39878820-39878867)
[»] chr3 (2 HSPs)
chr3 (1-264)||(16652401-16652668)
chr3 (1-264)||(7604966-7605233)
[»] chr2 (3 HSPs)
chr2 (1-264)||(27313888-27314155)
chr2 (137-264)||(10788791-10788922)
chr2 (1-48)||(27313840-27313887)
[»] chr7 (3 HSPs)
chr7 (1-264)||(24773669-24773936)
chr7 (1-264)||(35349742-35350009)
chr7 (1-48)||(24773621-24773668)
[»] chr6 (3 HSPs)
chr6 (1-264)||(2276819-2277086)
chr6 (1-251)||(920727-920983)
chr6 (1-48)||(920984-921031)
[»] chr1 (5 HSPs)
chr1 (1-264)||(4014153-4014420)
chr1 (1-264)||(15197836-15198106)
chr1 (1-264)||(25880544-25880815)
chr1 (1-178)||(38443473-38443651)
chr1 (1-48)||(38443652-38443699)
[»] scaffold0531 (1 HSPs)
scaffold0531 (1-198)||(11174-11371)


Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 9061757 - 9061490
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaacgatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  9061757 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagacta 9061658  T
Q  101 ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9061657 ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata 9061558  T
Q  201 ttttagccatacaaactctcaaatt----agcactacacacaatccttgactacttctatcagttcat 264  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||    
T  9061557 ttttagccatacaaactctcaaatttaacagcactacacacaatccttgactacttctatcagttcat 9061490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9061805 - 9061758
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatac 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9061805 actcatgttcaatgacatgataataataatttgaatcaaaacaaatac 9061758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 27018663 - 27018616
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatac 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27018663 actcatgttcaatgacatgataataataatttgaatcaaaacaaatac 27018616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 2416548 - 2416815
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaacgatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  2416548 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagacta 2416647  T
Q  101 ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2416648 ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata 2416747  T
Q  201 ttttagccatacaaactctcaaatt----agcactacacacaatccttgactacttctatcagttcat 264  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||    
T  2416748 ttttagccatacaaactctcaaatttaacagcactacacacaatccttgactacttctatcagttcat 2416815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 33826649 - 33826916
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaacgatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  33826649 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagacta 33826748  T
Q  101 ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33826749 ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata 33826848  T
Q  201 ttttagccatacaaactctcaaatt----agcactacacacaatccttgactacttctatcagttcat 264  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||    
T  33826849 ttttagccatacaaactctcaaatttagcagcactacacacaatccttgactacttctatcagttcat 33826916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 264
Target Start/End: Complemental strand, 39878812 - 39878552
Alignment:
Q  8 ttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaacgattattattga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||    
T  39878812 ttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacatactaagatatttaagaaaaaagactattattga 39878713  T
Q  108 tcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagc 207  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39878712 tcataagataaagaaaaatgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttactctcaaggtataaactacatattttagc 39878613  T
Q  208 catacaaactctcaaatt----agcactacacacaatccttgactacttctatcagttcat 264  Q
    ||||||||||||||||||    ||||||||||||||||||||||||||||||||| |||||    
T  39878612 catacaaactctcaaatttagcagcactacacacaatccttgactacttctatcaattcat 39878552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 39348577 - 39348310
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaacgatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||    
T  39348577 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagagaaaagacta 39348478  T
Q  101 ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata 200  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  39348477 ttattgatcagaagataaagaaaaacgatcgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaatgtataaattacata 39348378  T
Q  201 ttttagccatacaaactctcaaatt----agcactacacacaatccttgactacttctatcagttcat 264  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||||    
T  39348377 ttttagccatacaaactctcaaatttagcagcactacacacaatccttgactacttctatcagctcat 39348310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2416500 - 2416547
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatac 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2416500 actcatgttcaatgacatgataataataatttgaatcaaaacaaatac 2416547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 33826601 - 33826648
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatac 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33826601 actcatgttcaatgacatgataataataatttgaatcaaaacaaatac 33826648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 39878867 - 39878820
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatac 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39878867 actcatgttcaatgacatgataataataatttgaatcaaaacaaatac 39878820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 16652668 - 16652401
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaacgatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  16652668 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagacta 16652569  T
Q  101 ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16652568 ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata 16652469  T
Q  201 ttttagccatacaaactctcaaatt----agcactacacacaatccttgactacttctatcagttcat 264  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||    
T  16652468 ttttagccatacaaactctcaaatttagcagcactacacacaatccttgactacttctatcagttcat 16652401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 7604966 - 7605233
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaacgatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||    
T  7604966 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatatttactaagatatttaagaaaaaagacta 7605065  T
Q  101 ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata 200  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7605066 ttattgatcattagttaaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtatacactacata 7605165  T
Q  201 ttttagccatacaaactctcaaatt----agcactacacacaatccttgactacttctatcagttcat 264  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||    
T  7605166 ttttagccatacaaactctcaaatttaacagcactacacacaatccttgactacttctatcagttcat 7605233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 27313888 - 27314155
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaacgatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  27313888 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagacta 27313987  T
Q  101 ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27313988 ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata 27314087  T
Q  201 ttttagccatacaaactctcaaatt----agcactacacacaatccttgactacttctatcagttcat 264  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||    
T  27314088 ttttagccatacaaactctcaaatttaacagcactacacacaatccttgactacttctatcagttcat 27314155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 137 - 264
Target Start/End: Original strand, 10788791 - 10788922
Alignment:
Q  137 cactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatt----agcacta 232  Q
    |||||||||||||||||| |||||||||| |||| ||| |||||||||||||||||| ||||||||||||||||||||||||| |||||    |||||||    
T  10788791 cactaaatttatttatattaagtacaattattctattttttattctcaaggtataaattacatattttagccatacaaactcttaaatttagcagcacta 10788890  T
Q  233 cacacaatccttgactacttctatcagttcat 264  Q
    |||||||||||| | ||||||||||| |||||    
T  10788891 cacacaatccttcattacttctatcaattcat 10788922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 27313840 - 27313887
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatac 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27313840 actcatgttcaatgacatgataataataatttgaatcaaaacaaatac 27313887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 24773669 - 24773936
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaacgatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  24773669 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagacta 24773768  T
Q  101 ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24773769 ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata 24773868  T
Q  201 ttttagccatacaaactctcaaatt----agcactacacacaatccttgactacttctatcagttcat 264  Q
    |||||||||||||||||||||||||    ||||||||||||||||| |||||||||||||||||||||    
T  24773869 ttttagccatacaaactctcaaatttagcagcactacacacaatccgtgactacttctatcagttcat 24773936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 35350009 - 35349742
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaacgatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||    
T  35350009 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagagaaaagacta 35349910  T
Q  101 ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata 200  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  35349909 ttattgatcagaagataaagaaaaacgatcgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaatgtataaattacata 35349810  T
Q  201 ttttagccatacaaactctcaaatt----agcactacacacaatccttgactacttctatcagttcat 264  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||||    
T  35349809 ttttagccatacaaactctcaaatttagcagcactacacacaatccttgactacttctatcagctcat 35349742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 24773621 - 24773668
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatac 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24773621 actcatgttcaatgacatgataataataatttgaatcaaaacaaatac 24773668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 2277086 - 2276819
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaacgatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||    
T  2277086 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagagaaaagacta 2276987  T
Q  101 ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata 200  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  2276986 ttattgatcagaagataaagaaaaacgatcgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaatgtataaattacata 2276887  T
Q  201 ttttagccatacaaactctcaaatt----agcactacacacaatccttgactacttctatcagttcat 264  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||||    
T  2276886 ttttagccatacaaactctcaaatttagcagcactacacacaatccttgactacttctatcagctcat 2276819  T

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Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 920983 - 920727
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaac--gat 98  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   ||     
T  920983 actcaagttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaaaaaaaaaaagac 920884  T
Q  99 tattattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactaca 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  920883 tattattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactaca 920784  T
Q  199 tattttagccatacaaactctcaaatt----agcactacacacaatccttgactact 251  Q
    |||||||||||||||||||||||||||    ||||||||||||||||||||||||||    
T  920783 tattttagccatacaaactctcaaatttagcagcactacacacaatccttgactact 920727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 921031 - 920984
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatac 48  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  921031 actcatgttcaatgtcatgataataataatttgaatcaaaacaaatac 920984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 4014420 - 4014153
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaacgatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||    
T  4014420 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagagaaaagacta 4014321  T
Q  101 ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata 200  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  4014320 ttattgatcagaagataaagaaaaacgatcgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaatgtataaattacata 4014221  T
Q  201 ttttagccatacaaactctcaaatt----agcactacacacaatccttgactacttctatcagttcat 264  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||||    
T  4014220 ttttagccatacaaactctcaaatttagcagcactacacacaatccttgactacttctatcagctcat 4014153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 15197836 - 15198106
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaacgatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||    
T  15197836 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacatactaagatatttaagaaaaaagacta 15197935  T
Q  101 ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  15197936 ttattgatcataagataaagaaaaacgatcgagcctcactaaatttatttatatcaagtataatttttcagtttcttattctcaaggtataaactacata 15198035  T
Q  201 ttttagccatacaaactctcaaatt-------agcactacacacaatccttgactacttctatcagttcat 264  Q
    |||||||||||||||||||||||||       || ||||||||||||| ||||||||||||||||||||||    
T  15198036 ttttagccatacaaactctcaaatttagcagcagtactacacacaatctttgactacttctatcagttcat 15198106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 25880815 - 25880544
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaa--caaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaacgat 98  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||     
T  25880815 actcatgttcaatgacatgataataataatttgaatcaaaaaacaaatactttagttacaaccaaacaaaatactgactaagatatttaagaaaaaagac 25880716  T
Q  99 tattattgatcataagataaagaaaaacgattgagcctcactaaatt--tatttatatcaagtacaatttttctgtttcttattctcaaggtataaacta 196  Q
    |||||||||| | ||||||||||||||||||| ||||||||||||||  |||||||||||||||||||| || |||||||||||||||||||||||| ||    
T  25880715 tattattgatgagaagataaagaaaaacgattaagcctcactaaatttatatttatatcaagtacaattattttgtttcttattctcaaggtataaatta 25880616  T
Q  197 catattttagccatacaaactctcaaatt----agcactacacacaatccttgactacttctatcagttcat 264  Q
    |||||||||| ||||||||||||||||||    ||||||||||||||||||||||||||||||||| |||||    
T  25880615 catattttagtcatacaaactctcaaatttagcagcactacacacaatccttgactacttctatcaattcat 25880544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 38443651 - 38443473
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaacgatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  38443651 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagacta 38443552  T
Q  101 ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttc-tgtttctta 178  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38443551 ttattgatcatcagttaaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttcttgtttctta 38443473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 38443699 - 38443652
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatac 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38443699 actcatgttcaatgacatgataataataatttgaatcaaaacaaatac 38443652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 11174 - 11371
Alignment:
Q  1 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaacgatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||    
T  11174 actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagtcacaaccaaacaaaatacttactaagatatttaagaaaaaagacta 11273  T
Q  101 ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactaca 198  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11274 ttattgatcagaagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactaca 11371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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