View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21091_low_5 (Length: 271)
Name: NF21091_low_5
Description: NF21091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21091_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 27079628 - 27079870
Alignment:
| Q |
19 |
atatccggcataggcataaccaccccttgtttcaacatcttttcccggaaaaacttaccaggttgaacccannnnnnngccaaactaacactttcactaa |
118 |
Q |
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| T |
27079628 |
atatccggcataggcataaccaccccttgtttcaacatcttttctcggaaaaacttaccaggttgaacccatttttttgccaaactaacactttcactaa |
27079727 |
T |
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| Q |
119 |
cagaatttgttgaagaagaagatttcttagtataaccggcaaaagaaataccttttttatcgtaatccttaaacgtgttattaacaccataacctttgaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27079728 |
cagaatttgttgaagaagaagatttcttagtataaccagcaaaagaaataccttttttatcgtaatccttaaacgtgttattaacaccataacctttgaa |
27079827 |
T |
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| Q |
219 |
tgttaccttatgatccgcatcagcacctttagcataccctttg |
261 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27079828 |
tgttatcttatgatccgcatcagcacctttagcataccctttg |
27079870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 27065911 - 27066153
Alignment:
| Q |
19 |
atatccggcataggcataaccaccccttgtttcaacatcttttcccggaaaaacttaccaggttgaacccannnnnnngccaaactaacactttcactaa |
118 |
Q |
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||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |||| ||||| | |
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| T |
27065911 |
atatctggcataggcataactgtcccttccttcaacatcttctcccggaaaaacttaccaggttgaaccatgttttttgccaaactaccactatcactga |
27066010 |
T |
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| Q |
119 |
cagaatttgttgaagaagaagatttcttagtataaccggcaaaagaaataccttttttatcgtaatccttaaacgtgttattaacacca---taaccttt |
215 |
Q |
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||| || ||||||| || || | ||| |||||| ||||||||||||||||| || || ||||||||||| || |||||| ||| ||| |||| |
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| T |
27066011 |
gagagttagttgaagtagtag---ttttattataactagcaaaagaaatacctttcttgtcataatccttaaatgtattattattcccattgtaaacttt |
27066107 |
T |
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| Q |
216 |
gaatgttaccttatgatccgcatcagcacctttagcataccctttg |
261 |
Q |
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|| | ||||||||||| |||||||||||||||||| |||||| |
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| T |
27066108 |
aaacgaaaccttatgatctaaatcagcacctttagcatagcctttg |
27066153 |
T |
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