View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21092_low_2 (Length: 452)
Name: NF21092_low_2
Description: NF21092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21092_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 272 - 434
Target Start/End: Original strand, 23430456 - 23430618
Alignment:
| Q |
272 |
gcttattattactttctcttgcatacaaaaatgtccaaagtcatgaccttagcgttgctcatgctcctagttgatactcttcctaccatggcgctttctg |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23430456 |
gcttattattactttctcttgcatacaaaaatgtccaaagtcatgaccttagcgctgctcatgctcctagttgatactcttcctaccatggcgctttctg |
23430555 |
T |
|
| Q |
372 |
aagaggttaagaatcttcccaccacttattctccaacccatgttcacctgacattgccttcca |
434 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23430556 |
aagaggttaagaatcttcccaccacttactctccaacccatgttcacctgacattgccttcca |
23430618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 23430316 - 23430468
Alignment:
| Q |
101 |
gttgacctctaattttataggtgtgagttaatctcctaacaaactttgacaccagacaatcctggtt--ggcattcatttttcatctatatataaagcga |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
23430316 |
gttgacctctaattttataggtgtgagttaatctcctaacaaactttgacaccagacaatcctggttggggcattcatttttcatctatatataaaacga |
23430415 |
T |
|
| Q |
199 |
gaatcatacattaattaaatccatttttcttctacaataaagcttattattact |
252 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23430416 |
gaatcatacattaattaaatcca-ttttcttctacaataaagcttattattact |
23430468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 272 - 434
Target Start/End: Original strand, 23438513 - 23438676
Alignment:
| Q |
272 |
gcttattattactttctcttgcatac-aaaaatgtccaaagtcatgaccttagcgttgctcatgctcctagttgatactcttcctaccatggcgctttct |
370 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||| ||||||||| ||||||| || ||||||||||||||||| || |||| || | || ||||||| |
|
|
| T |
23438513 |
gcttatttttactttctcttgcataagaaaaatgtcaaaagtcatggccttagcattactcatgctcctagttgagacaattcccactacggtgctttct |
23438612 |
T |
|
| Q |
371 |
gaagaggttaagaatcttcccaccacttattctccaacccatgttcacctgacattgccttcca |
434 |
Q |
| |
|
|||||||| ||| ||||||||| ||||| ||| | |||||| ||||||||||||||||||||| |
|
|
| T |
23438613 |
aaagaggttgagactcttcccacgacttactcttctacccatcttcacctgacattgccttcca |
23438676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 273 - 434
Target Start/End: Original strand, 23445250 - 23445411
Alignment:
| Q |
273 |
cttattattactttctcttgcatacaaaaatgtccaaagtcatgaccttagcgttgctcatgctcctagttgatactcttcctaccatggcgctttctga |
372 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||||| | ||||||||| ||||| || | || ||||||||| |
|
|
| T |
23445250 |
cttatttttactttctcttgcatatcaaaatgtccaaagccatgaccttagtgttgctcctcctcctagttttgtctcttttcactacggtgctttctga |
23445349 |
T |
|
| Q |
373 |
agaggttaagaatcttcccaccacttattctccaacccatgttcacctgacattgccttcca |
434 |
Q |
| |
|
||||||| ||| ||||||| ||||||| ||||| |||||| ||||| ||||||||||||||| |
|
|
| T |
23445350 |
agaggttgagactcttcccgccacttactctcctacccatattcacatgacattgccttcca |
23445411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 23438369 - 23438525
Alignment:
| Q |
101 |
gttgacctctaattttataggtgtgagttaatctcctaacaaactttgacaccagacaatcctggttggc----attcatttttcatctatatataaagc |
196 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||| |||||||||||||| |||| |||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
23438369 |
gttgacttctaattttatagatgtgagttaatct---aacaaactttgacagcagagaatcatggttggcgtccattcatttttcttctatatataaagc |
23438465 |
T |
|
| Q |
197 |
gagaatcatacattaattaa----atccatttttcttctacaataaagcttattattact |
252 |
Q |
| |
|
||||| | ||||| |||| |||||||||||||| | ||||||||||||| ||||| |
|
|
| T |
23438466 |
aagaattagacattcattactcacatccatttttcttcaataataaagcttatttttact |
23438525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University