View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21092_low_4 (Length: 369)
Name: NF21092_low_4
Description: NF21092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21092_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 7 - 343
Target Start/End: Original strand, 3805705 - 3806040
Alignment:
| Q |
7 |
ggagcagagaaagaagcagtaaccaagaacaccaatattatttcacaataagaacagcatacactggtcttcgtgtcgacactttttgtcatttatggtt |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3805705 |
ggagaagagaaagaagcagtaaccaagaacaccaatattatttcacaataagaacagcatacactagtcttcgtgtcgacactttttgtcatttatggtt |
3805804 |
T |
|
| Q |
107 |
caaactgttgcaaaatacagtagaatacaatactcaaaccaaagacaatagaatttgttgtgtcgtgaaaaccagtatcctgaaagcgaattcggcaaga |
206 |
Q |
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| T |
3805805 |
caaactgttgcgaaatacagtagaatacaatactcaaaccaaagacaatagaatttgttgtgtcgtgaaaaccagtatcctgaaagcgaattcggcaaga |
3805904 |
T |
|
| Q |
207 |
actcggtgcaatttaaaagccgagccctatgaacacatgcacttgtggtctgggtatgaaaagcacagcacaatttgcccaaataattgataattgaaag |
306 |
Q |
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|||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
3805905 |
actcggtgcaattt-aaaccagtattctatgaacacatgcacttgtggtctgggtatgaaaagcacagaacaatttgcccaaataattgataagtgaaag |
3806003 |
T |
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| Q |
307 |
aaagaaaaaatactaagaagagaacagattctgctta |
343 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
3806004 |
aaagaaaaaatactaagaagagaacagattctgctta |
3806040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 395247 - 395142
Alignment:
| Q |
7 |
ggagcagagaaagaagcagtaaccaagaacaccaatattatttcacaataagaacagcatacactggtcttcgtgtcgacactttttgtcatttatggtt |
106 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
395247 |
ggagaagagaaagaagcagcaaccaagaacaccaaaatgatttcacaataagaacagcatacacgagtcttcgtgttgacactttttgtcatttatggtt |
395148 |
T |
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| Q |
107 |
caaact |
112 |
Q |
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|||||| |
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| T |
395147 |
caaact |
395142 |
T |
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