View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21093_high_19 (Length: 294)
Name: NF21093_high_19
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21093_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 37492659 - 37492937
Alignment:
| Q |
11 |
gatgaaaaaggaaatcaaccggtaggattgcaaacgaaacggagagagaaatatgaatgggaattgaaacgctttgaagatcttgagattagtgacttct |
110 |
Q |
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| T |
37492659 |
gatgaaaaagggaatcaaccggtaggattgcaaccgaaacggagagagaaatatgaatgggaattgaaacgctttgaagatcttgagattagtgacttct |
37492758 |
T |
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| Q |
111 |
ctatgtatgacgatgacattaagccttttatgtttatgtgtgggcgatttacgtataagaataaggcttttattaaaaaagataaggagattagagtcgc |
210 |
Q |
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| T |
37492759 |
ctatgtatgacgatgacattaagccttttatgtttatgtgtgggcgatttacgtataagaataaggctcagattcaacaagataaggagattagaatcgc |
37492858 |
T |
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| Q |
211 |
cagagctaagcataaaaggcgttctcgcaacctatctgt-aagcatctatctatttcaatttcatcctgttgtgtttca |
288 |
Q |
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| T |
37492859 |
cagggctaagcataaaaagctctctcgcaacctatctgtaaaacatctatctatttcaatttcatcctgttgtgtttca |
37492937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 40 - 202
Target Start/End: Original strand, 37473051 - 37473213
Alignment:
| Q |
40 |
gcaaacgaaacggagagagaaatatgaatgggaattgaaacgctttgaagatcttgagattagtgacttctctatgtatgacgatgacattaagcctttt |
139 |
Q |
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| T |
37473051 |
gcaaccgaaacagagagagaaatatgaatgggaatcgaaacgcgttgaagatcttgagatgagtgacttctctatgtttgacgatgacattgagcctttt |
37473150 |
T |
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| Q |
140 |
atgtttatgtgtgggcgatttacgtataagaataaggcttttattaaaaaagataaggagatt |
202 |
Q |
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| T |
37473151 |
atgtttatatgcgcgcgctttatttacaagaataaggcccagattcaaaaagataaggagatt |
37473213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 202
Target Start/End: Original strand, 37481786 - 37481929
Alignment:
| Q |
59 |
aaatatgaatgggaattgaaacgctttgaagatcttgagattagtgacttctctatgtatgacgatgacattaagccttttatgtttatgtgtgggcgat |
158 |
Q |
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|||||||||||||||| ||||||| | ||||||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||| || | ||| | |
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| T |
37481786 |
aaatatgaatgggaatcgaaacgcgtcgaagatcttgatatgagtgacttctctatgtttgacgatgacattgagccttttatgtttatatgcgcgcgct |
37481885 |
T |
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| Q |
159 |
ttacgtataagaataaggcttttattaaaaaagataaggagatt |
202 |
Q |
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| T |
37481886 |
ttatttacaagaataaggcccagattcaaaaagataaggagatt |
37481929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 59 - 212
Target Start/End: Original strand, 37487483 - 37487636
Alignment:
| Q |
59 |
aaatatgaatgggaattgaaacgctttgaagatcttgagattagtgacttctctatgtatgacgatgacattaagccttttatgtttatgtgtgggcgat |
158 |
Q |
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||||||| |||||||| ||||||| || ||||||||||||||||||||| || | || |||||||||||||||||||| |||| |||| |||| || | |
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| T |
37487483 |
aaatatgtatgggaatcgaaacgcgttaaagatcttgagattagtgactgctttgtgcatgacgatgacattaagcctcttatatttaaatgtgatcgct |
37487582 |
T |
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| Q |
159 |
ttacgtataagaataaggcttttattaaaaaagataaggagattagagtcgcca |
212 |
Q |
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| T |
37487583 |
tcgagtataggaataaggcacagattcaaaaagataaggagattaaagtcgcca |
37487636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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