View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21093_high_2 (Length: 569)
Name: NF21093_high_2
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21093_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 157 - 377
Target Start/End: Complemental strand, 46300711 - 46300492
Alignment:
| Q |
157 |
ctgtgtgccgccgtggagttgatgattacttgatataaccacccttcagcagcaaattctatgttataatgatttactgtttgagaaatgc--tagctag |
254 |
Q |
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| T |
46300711 |
ctgtgtgccgccgtggagttgatgattacttgatataaccacccttcagcagcaaattctatgttataatgatttactgtttcagaaatgctatagctag |
46300612 |
T |
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| Q |
255 |
ggtcacatccactaaataagaa-tggacatgtgtgtgtctcacttttttatttcaattaacctgtaaccagatcaacatgtttctaaacattttaannnn |
353 |
Q |
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| T |
46300611 |
ggttacatccacttaataagaattggaca----tgtgtctcacttttttatttcaattaacctgtaacctgatcaacatgtttctaaacattttaatttt |
46300516 |
T |
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| Q |
354 |
nnnaataatttaatttaacagttg |
377 |
Q |
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| T |
46300515 |
tttaaaaatttaatttaacagttg |
46300492 |
T |
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Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 453 - 547
Target Start/End: Complemental strand, 34726450 - 34726356
Alignment:
| Q |
453 |
gaaaactgtttataaaattgaaatgcttaacaccactcttctttgttgtctttcttatttacttaagagtttaccttgcaagttacatgagacat |
547 |
Q |
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| T |
34726450 |
gaaaactgtttgaaaaattgaaatgcttaacaccactcttctttgctctcctgcttatttactcaagagtttgccttgcaagttacatgagacat |
34726356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 539
Target Start/End: Complemental strand, 34730667 - 34730581
Alignment:
| Q |
453 |
gaaaactgtttataaaattgaaatgcttaacaccactcttctttgttgtctttcttatttacttaagagtttaccttgcaagttaca |
539 |
Q |
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| T |
34730667 |
gaaaaatgttttaaaacttgacatgcttaacgtcacatttctttgctgtcctgcttatttacgcaagagtttaccttgcaagttaca |
34730581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 61 - 152
Target Start/End: Original strand, 20700314 - 20700405
Alignment:
| Q |
61 |
gatttcacgtcaagaaaggagaggacttcggcgatgagatcatccggaagggtcactggcgaaggagggttgatttcacgccgagacttaga |
152 |
Q |
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| T |
20700314 |
gatttcacgtcaagaaaggccaggacttccgcgatgagatcatccgggaggattaccggcgaaggagagttgatttcatgccgaaacttaga |
20700405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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