View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21093_high_20 (Length: 290)
Name: NF21093_high_20
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21093_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 25 - 277
Target Start/End: Original strand, 52876140 - 52876392
Alignment:
| Q |
25 |
catttcaaggggatgcataattgtatcgtaactctcactttaaggtataacatatgtcttatttcttctcataaaaagtaaaatatttgttcttttttca |
124 |
Q |
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| T |
52876140 |
catttcaaggggatgcataattgtattgtaactctcactttaaggtataacatatgtcttatttcttctcataaaaagtaaaatatttgttcttttttca |
52876239 |
T |
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| Q |
125 |
tattgtgtgcttgttaacttttcatttgtttttcaaatttatgagcagcaaacgtcccaattttggtcagaagactgtgaatttacctatgtttggagag |
224 |
Q |
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| T |
52876240 |
tattgtgtgcttgttaacttttcatttgtttttcaaatttatgagcagcaaacgtcccaattttggtcagaagactgtgaatttacctatgtttggagag |
52876339 |
T |
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| Q |
225 |
atttctattttctcactggtggtgttgctattctctgtggcatttgcgataat |
277 |
Q |
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| T |
52876340 |
atttctattttctcactggtggtgttgctattctctgtggcatttgcgataat |
52876392 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 271
Target Start/End: Complemental strand, 256480 - 256396
Alignment:
| Q |
187 |
ttggtcagaagactgtgaatttacctatgtttggagagatttctattttctcactggtggtgttgctattctctgtggcatttgc |
271 |
Q |
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| T |
256480 |
ttggtcaaaagaccgtgaatgtacctctatttggggagatttctattttctcgctggcagtgttcttattctgtctggcatttgc |
256396 |
T |
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