View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21093_high_24 (Length: 255)

Name: NF21093_high_24
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21093_high_24
NF21093_high_24
[»] chr1 (3 HSPs)
chr1 (10-96)||(12276342-12276428)
chr1 (102-154)||(12276470-12276522)
chr1 (175-240)||(12276517-12276586)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 12276342 - 12276428
Alignment:
Q  10 agaagaaggcaatggagcactgtcctgttacaaagctacaacgctgaagaatttctttttggtgctagcaattgtacttatgaattt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12276342 agaagaaggcaatggagcactgtcctgttacaaagctacaacgctgaagaatttctttttggtgctagcaattgtacttatgaattt 12276428  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 12276470 - 12276522
Alignment:
Q  102 ttgtctcatgttgtttctttgattctcctcaagtccatcagtctcaatttctt 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12276470 ttgtctcatgttgtttctttgattctcctcaagtccatcagtctcaatttctt 12276522  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 12276517 - 12276586
Alignment:
Q  175 tttcttggcttctttcctaagaaagtcttcatgtaggcgcctagcaacatgtc----catcacaaatttt 240  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    |||||||||||||    
T  12276517 tttcttggcttctttcctatgaaagtcttcatgtaggcgcctagcaacatgtctgtccatcacaaatttt 12276586  T

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