View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21093_high_26 (Length: 244)
Name: NF21093_high_26
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21093_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 35970285 - 35970068
Alignment:
| Q |
9 |
ctaaataagtactactatatcacaacaatatagtatccgagacatactctgagatggtcgctgaataagtatatcacaatatggcttcaaaattggagac |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35970285 |
ctaaataagtactactatatcacaacaatatagtatccgagacatactctgagatggtcgctaaataagtatatcacaatatggcttcaaaattggagac |
35970186 |
T |
|
| Q |
109 |
tatcagctagatgaatctcatggacctcaaatgaagaggtcgtgtgatagaccaagtgcttggcaaatcaaacatgtagtaaagtcagaaaatttgattc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35970185 |
tatcagctagatgaatctcatggacctcaaatgaagaggtcgtgtgatagaccaagtgcttggcaaatcaaacatgtagtaaagtcagaaaatttgattc |
35970086 |
T |
|
| Q |
209 |
tttttcagtcacttatct |
226 |
Q |
| |
|
|||||||||||||||||| |
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| T |
35970085 |
tttttcagtcacttatct |
35970068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 40 - 226
Target Start/End: Complemental strand, 35974651 - 35974466
Alignment:
| Q |
40 |
agtatccgagacatactctgagatggtcgctgaataagtatatcacaatatggcttcaaaattggagactatcagctagatgaatctcatggacctcaaa |
139 |
Q |
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||||||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35974651 |
agtatccaagacatactctgagatggtcgctaattaattatatcacaatatggcttcaaaattggagactatcagctagatgaatctcatggacctcaaa |
35974552 |
T |
|
| Q |
140 |
tgaagaggtcgtgtgatagaccaagtgcttggcaaatcaaacatgtagtaaagtcagaaaatttgattctttttcagtcacttatct |
226 |
Q |
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| T |
35974551 |
tgaagagatcatgcgatagaccaaatgcttggcaaatcaaacatgtagtaaagtcatgaaaattgatt-tttttcagtcacttatct |
35974466 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 185
Target Start/End: Original strand, 36634109 - 36634221
Alignment:
| Q |
72 |
aataagtatatcacaatatggcttcaaaattggagactatcagctagatgaatctcatggacctcaaatgaagaggtcgtgtgatagaccaagtgcttgg |
171 |
Q |
| |
|
||||||||||| ||||| |||||| |||||||||||||| ||| |||||||| |||||||||||||||||||||| || |||||| ||||| ||||| |
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|
| T |
36634109 |
aataagtatattacaatttggctttaaaattggagactaccagttagatgaa-ctcatggacctcaaatgaagagttcatgtgatcaaccaaatgcttct |
36634207 |
T |
|
| Q |
172 |
caaatcaaacatgt |
185 |
Q |
| |
|
|||||||||||||| |
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| T |
36634208 |
caaatcaaacatgt |
36634221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 185
Target Start/End: Original strand, 36641430 - 36641542
Alignment:
| Q |
72 |
aataagtatatcacaatatggcttcaaaattggagactatcagctagatgaatctcatggacctcaaatgaagaggtcgtgtgatagaccaagtgcttgg |
171 |
Q |
| |
|
||||||||||| ||||| |||||| |||||||||||||| ||| ||||| || ||||||||||||||||||||| || |||||| |||||| |||||| |
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| T |
36641430 |
aataagtatattacaatttggctttaaaattggagactaccagttagataaag-tcatggacctcaaatgaagagttcatgtgatcgaccaaatgcttgt |
36641528 |
T |
|
| Q |
172 |
caaatcaaacatgt |
185 |
Q |
| |
|
||| |||||||||| |
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|
| T |
36641529 |
caagtcaaacatgt |
36641542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 35970383 - 35970321
Alignment:
| Q |
24 |
tatatcacaacaatatagtatccgagacatactctgagatggtcgctgaataagtatatcacaa |
87 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| |
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|
| T |
35970383 |
tatatcacaacaatata-tatccgagccatactctgagatggtcgctaaataagtatatcacaa |
35970321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 36911761 - 36911673
Alignment:
| Q |
33 |
acaatatagtatccgagacatactctgagatggtcgctgaataagtatatcacaatatggcttcaaaattggagactatcagctagatgaa |
123 |
Q |
| |
|
||||| |||||||| | ||||||||||||||||| ||| |||||||||| ||||| |||||| |||||||||||| |||||||||||||| |
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| T |
36911761 |
acaatttagtatcccatacatactctgagatggtagctaaataagtata--acaatttggctttaaaattggagaccatcagctagatgaa |
36911673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 182
Target Start/End: Original strand, 36663768 - 36663873
Alignment:
| Q |
76 |
agtatatcacaatatggcttcaaaattggagactatcagctagatgaatctcatggacctcaaatgaagaggtcgtgtgatagaccaagtgcttggcaaa |
175 |
Q |
| |
|
||||||| ||||| | |||| |||||||||||||| || ||||||||| ||||||||||||||||||||| || ||||||||||||| |||| |||| |
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|
| T |
36663768 |
agtatattacaatttcgctttaaaattggagactaccaactagatgaa-ctcatggacctcaaatgaagaactcatgtgatagaccaaacacttgtcaaa |
36663866 |
T |
|
| Q |
176 |
tcaaaca |
182 |
Q |
| |
|
||||||| |
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|
| T |
36663867 |
tcaaaca |
36663873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 35970330 - 35970275
Alignment:
| Q |
24 |
tatatcacaacaatatagtatccgagacatactctgagatggtcgctgaataagta |
79 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| |
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|
| T |
35970330 |
tatatcacaacaatatagtatcccagacatactctgagatggttgctaaataagta |
35970275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 35970426 - 35970389
Alignment:
| Q |
33 |
acaatatagtatccgagacatactctgagatggtcgct |
70 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||| |
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|
| T |
35970426 |
acaatatagtatctgagacatactctaagatggtcgct |
35970389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 43429071 - 43429103
Alignment:
| Q |
107 |
actatcagctagatgaatctcatggacctcaaa |
139 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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|
| T |
43429071 |
actaccagctagatgaatctcatggacctcaaa |
43429103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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