View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21093_high_28 (Length: 239)
Name: NF21093_high_28
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21093_high_28 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 45066435 - 45066655
Alignment:
| Q |
19 |
aaataagcattagtgagccggaccattagtatgtcaaaggacgcttggcgaaataaacttaaattttaaacttttttattaagcaaagagttgaagataa |
118 |
Q |
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| T |
45066435 |
aaataagcattagtgagccggaccattagtatgtcaaaggacgcttggcgaaataaacttaaattttaaacttttttattaagcaaagagttgaagataa |
45066534 |
T |
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| Q |
119 |
gcaacctggttaacatagtgaataaacttgtccaattgcctataccaggtatgtgcatattggtacttgaaatctgtccccattgtccacattatatgat |
218 |
Q |
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| T |
45066535 |
gcaacctggttaacatagtgaataaacttgtccaattgcctataccaggtatgtgcatattggtacttgaaatctgtccccattgtccacattatatgat |
45066634 |
T |
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| Q |
219 |
ttgtgcgcgttatattggcct |
239 |
Q |
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| T |
45066635 |
ttgtgcgcgttatattggcct |
45066655 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 32384320 - 32384390
Alignment:
| Q |
161 |
taccaggtatgtgcatattggtacttgaaatctgtccccattgtccacattatatgatttgtgcgcgttat |
231 |
Q |
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| T |
32384320 |
taccatgtatgtgcgtattgatacttaaaatcagttcccattgtccacataatgtgatttgtccgagttat |
32384390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 32398893 - 32398990
Alignment:
| Q |
122 |
acctggttaacatagtgaataaacttgtccaattgcctataccaggtatgtgcatattggtacttgaaatctgtccccattgtccacattatatgatt |
219 |
Q |
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| T |
32398893 |
acctgattgacatagtgaataaacttatccatctgcctaaaccatgaattagcatattgatagcggaagtctgtccccattgcccacattatgtgatt |
32398990 |
T |
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