View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21093_high_3 (Length: 506)

Name: NF21093_high_3
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21093_high_3
NF21093_high_3
[»] chr5 (3 HSPs)
chr5 (14-294)||(23353144-23353424)
chr5 (290-396)||(23353475-23353581)
chr5 (459-496)||(23353591-23353628)
[»] chr3 (1 HSPs)
chr3 (82-159)||(12832661-12832738)
[»] chr4 (2 HSPs)
chr4 (45-111)||(19324055-19324121)
chr4 (90-172)||(18997707-18997788)
[»] scaffold0168 (1 HSPs)
scaffold0168 (85-169)||(23304-23388)
[»] scaffold0098 (1 HSPs)
scaffold0098 (203-291)||(3593-3681)
[»] chr2 (1 HSPs)
chr2 (173-278)||(32067133-32067239)
[»] chr1 (1 HSPs)
chr1 (83-144)||(32928608-32928669)
[»] chr7 (1 HSPs)
chr7 (224-288)||(27128497-27128560)


Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 294
Target Start/End: Original strand, 23353144 - 23353424
Alignment:
Q  14 cacttaattaattccagtttgtatgacatattttctaaacaaggtttttataaaagtgttttggttaggaattggactttgcaatttatatgataaaaca 113  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23353144 cacttaattaattcaagtttgtatgacatattttctaaacaaggtttttataaaagtattttggttaggaattggactttgcaatttatatgataaaaca 23353243  T
Q  114 agagtagaaaaattatattgtcgagattaagcttcacgaactattcatttaatatcctttcttaattaattgtatacttttatgttttagatataaatcc 213  Q
    |||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23353244 agagtagaaaaattatattgtcgagattaagctttatgaactattcgtttaatatcctttcttaattgattgtatacttttatgttttagatataaatcc 23353343  T
Q  214 accctttcactagcgtacgtcttcagctaaggttaatgacgcaagataacttagaaacaactgacttccgatgcacagtgg 294  Q
    |||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| |||||    
T  23353344 accctttcactagcgtacgtcttcagctaaggttaacgacacgagataacttagaaacaactgacttccgatgcatagtgg 23353424  T

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Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 290 - 396
Target Start/End: Original strand, 23353475 - 23353581
Alignment:
Q  290 agtgggacgacttatacaacaatttccatacttaactggaagagcaagtatccttgagtacactcatgctcattcaagtatatgatataatgataaaaat 389  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23353475 agtgggacgacttatacaacaatttccatacttaactggaaaagaaagtatccttgagtacactcatgctcattcaagtatatgatataatgataaaaat 23353574  T
Q  390 aggcaga 396  Q
    |||||||    
T  23353575 aggcaga 23353581  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 459 - 496
Target Start/End: Original strand, 23353591 - 23353628
Alignment:
Q  459 tcttttttctcccttaatatctctatttcccccctttg 496  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23353591 tcttttttctcccttaatatctctatttcccccctttg 23353628  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 12832661 - 12832738
Alignment:
Q  82 gaattggactttgcaatttatatgataaaacaagagtagaaaaattatattgtcgagattaagcttcacgaactattc 159  Q
    ||||||| |||||||||||| ||||||||||||||||||||| |||||||| ||| |||||||||||  |||||||||    
T  12832661 gaattggtctttgcaatttaaatgataaaacaagagtagaaagattatattttcgggattaagcttcgtgaactattc 12832738  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 19324121 - 19324055
Alignment:
Q  45 tttctaaacaaggtttttataaaagtgttttggttaggaattggactttgcaatttatatgataaaa 111  Q
    ||||||||||| || ||| |||| |||||||||||||||||||| |||||||||||| |||||||||    
T  19324121 tttctaaacaaagtatttgtaaacgtgttttggttaggaattggtctttgcaatttaaatgataaaa 19324055  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 18997788 - 18997707
Alignment:
Q  90 ctttgcaatttatatgataaaacaagagtagaaaaattatattgtcgagattaagcttcacgaactattcatttaatatcctt 172  Q
    |||| |||| ||||||||||||||| |||||||| || ||| ||||| |||||||||||| ||||||||  | ||||||||||    
T  18997788 ctttccaatgtatatgataaaacaaaagtagaaagat-atactgtcgggattaagcttcatgaactatttgtctaatatcctt 18997707  T

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Target: scaffold0168 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 23304 - 23388
Alignment:
Q  85 ttggactttgcaatttatatgataaaacaagagtagaaaaattatattgtcgagattaagcttcacgaactattcatttaatatc 169  Q
    |||| ||| |||| ||||||||||||| ||||||||| | |||||||||| |||||||||||||  ||||||||| | |||||||    
T  23304 ttggtcttggcaaattatatgataaaataagagtagagagattatattgttgagattaagcttcgtgaactattcgtctaatatc 23388  T

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Target: scaffold0098 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 291
Target Start/End: Complemental strand, 3681 - 3593
Alignment:
Q  203 gatataaatccaccctttcactagcgtacgtcttcagctaaggttaatgacgcaagataacttagaaacaactgacttccgatgcacag 291  Q
    ||||||| ||||| ||||||  ||| ||||||| | ||||||||||| ||||| ||||||| ||||||||||||| ||  |||||||||    
T  3681 gatataactccactctttcatcagcatacgtctccggctaaggttaaggacgcgagataacatagaaacaactgatttttgatgcacag 3593  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 278
Target Start/End: Original strand, 32067133 - 32067239
Alignment:
Q  173 tcttaattaattgtatactttt-atgttttagatataaatccaccctttcactagcgtacgtcttcagctaaggttaatgacgcaagataacttagaaac 271  Q
    |||||||| ||||||||||||| ||||  ||||||||| |||||| |||||  |||||| |||| | ||| ||||||| ||||  | ||||| |||||||    
T  32067133 tcttaattgattgtatactttttatgtcctagatataactccaccttttcatcagcgtatgtctccggctcaggttaacgacgtgaaataacatagaaac 32067232  T
Q  272 aactgac 278  Q
    |||||||    
T  32067233 aactgac 32067239  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 32928608 - 32928669
Alignment:
Q  83 aattggactttgcaatttatatgataaaacaagagtagaaaaattatattgtcgagattaag 144  Q
    |||||| ||||||| |||| || ||||||||| | |||||| ||||||||||||||||||||    
T  32928608 aattggtctttgcagtttaaataataaaacaaaaatagaaagattatattgtcgagattaag 32928669  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 27128497 - 27128560
Alignment:
Q  224 tagcgtacgtcttcagctaaggttaatgacgcaagataacttagaaacaactgacttccgatgca 288  Q
    |||||||||||| | ||||||||||| ||||| ||||  | |||||||||||||||| |||||||    
T  27128497 tagcgtacgtctccggctaaggttaacgacgcgagat-gcatagaaacaactgactttcgatgca 27128560  T

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