View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21093_high_30 (Length: 237)
Name: NF21093_high_30
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21093_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 9580105 - 9580325
Alignment:
| Q |
1 |
atcaaataataagaccatcagaaaatataactaaccccatcaagaagtatattggaagccttgaaatctctatatatgacttgcttatccgaggagtgca |
100 |
Q |
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| T |
9580105 |
atcaaataataagaccatcagaaaaaataactaaccccatcaagaagtatattggaagccttgaaatctctatatatgacttgcttatccgaggagtgca |
9580204 |
T |
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| Q |
101 |
agaaagctaagcctcgagctgcatcagttgctattttgagtcgagtgttccaagaaagtggctctatgttagtatttcctnnnnnnncagaaacaaaatt |
200 |
Q |
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| T |
9580205 |
agaaagctaagcctcgagctgcatcagtcgctattttgagtcgagtgttccaagaaagtggctctatgttagtatttcctaaaaaaacagaaacaaaatt |
9580304 |
T |
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| Q |
201 |
gaaattaaactcagatccata |
221 |
Q |
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||||||||||||||||||||| |
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| T |
9580305 |
gaaattaaactcagatccata |
9580325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 180
Target Start/End: Complemental strand, 31142440 - 31142287
Alignment:
| Q |
27 |
ataactaaccccatcaagaagtatattggaagccttgaaatctctatatatgacttgcttatccgaggagtgcaagaaagctaagcctcgagctgcatca |
126 |
Q |
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|||||| ||||||||||| |||||||| |||||||| |||||||| ||||| ||||| | | || ||||||||||| || || ||||||||| || |
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| T |
31142440 |
ataactgaccccatcaaggagtatatttgaagccttaaaatctctgtatataacttgatctgctgaatcatgcaagaaagccaaaccacgagctgcacca |
31142341 |
T |
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| Q |
127 |
gttgctattttgagtcgagtgttccaagaaagtggctctatgttagtatttcct |
180 |
Q |
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| T |
31142340 |
atagctattttgattcttgtgttccaagaaagtggttcaatgttaggatttcct |
31142287 |
T |
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