View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21093_high_31 (Length: 233)
Name: NF21093_high_31
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21093_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 88 - 217
Target Start/End: Complemental strand, 52876071 - 52875940
Alignment:
| Q |
88 |
ttgaattgactagtttcatatgatacattttttatagtaaagaaaaatctatccaacnnnnnnnnggagaaatagagtcagaggcaaacaaatattctcg |
187 |
Q |
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| T |
52876071 |
ttgaattgactaatttcatatgatacattttttatagtaaagaaaaatctatccaacaaaaaaaaggagaaatagagtcagaggcaaacaaatattctcg |
52875972 |
T |
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| Q |
188 |
aaag--aataaaaaatgtatacaactataaac |
217 |
Q |
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|||| || |||||| |||||||||||||||| |
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| T |
52875971 |
aaagaaaaaaaaaaacgtatacaactataaac |
52875940 |
T |
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