View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21093_high_4 (Length: 429)
Name: NF21093_high_4
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21093_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 11 - 415
Target Start/End: Complemental strand, 336513 - 336109
Alignment:
| Q |
11 |
cagagaccatggacaagtcctcttcatcagagtcctcaatattttgagcctttttgtgtttagtttcttcataacaaccaagtgaaggtgtatgtgattg |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
336513 |
cagaaaccatggacaagtcctcttcatcagagtcctcaatattttgagcctttttgtgtttagtttcttcataacaaccaagtgaaggtgtatgtgattg |
336414 |
T |
|
| Q |
111 |
tgaggtattgagagaacggtcaaggtatagagtccatccagactcacacccactgctgcattctgaagctaatgtatccatatgatcttgttttggagta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
336413 |
tgaggtattgagagaacggtcaaggtatagagtccatccagactcacacccactgctgcattctgaagctaatgtatccatatgatcttgttttggagta |
336314 |
T |
|
| Q |
211 |
actgggataggactctccaatttatgatgaaatgaaagagttacggtaaaaaagagttaactatat-aattaactaacttgtgtatatcaaactctcaca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
336313 |
actgggataggactctccaatttatgatgaaatgaaagagttacggtaaaaaagagttaactatataaattaactaacttgtgtatatcaaactctcaca |
336214 |
T |
|
| Q |
310 |
tgaccatatcctattatttattattataagaagtgtatgtggcaatgtgtcactcatctagtttagttttggtaaaaattgaaagaatagtggataggtg |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
336213 |
tgaccatatcctattatttattattataagaagtgtatgtggcaatgtgtcactcatctagtttagttttggt-aaaattgaaagaatagtggataggtg |
336115 |
T |
|
| Q |
410 |
gtggtg |
415 |
Q |
| |
|
|||||| |
|
|
| T |
336114 |
gtggtg |
336109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University