View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21093_high_5 (Length: 413)
Name: NF21093_high_5
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21093_high_5 |
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| [»] scaffold0160 (1 HSPs) |
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Alignment Details
Target: scaffold0160 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 396
Target Start/End: Original strand, 27614 - 28004
Alignment:
| Q |
7 |
aatattgctcccacaattcaaaatttctggctccaccactgaataaaaacacaacaatgagctaaatttttatgatgtatgatgtaagaagtcatttttc |
106 |
Q |
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| T |
27614 |
aatattgctctcacaattcaaaatttctggctccaccactgaataaaaacacaacaatgaactaaatttttatgatgtattatgtaagaagccatttttc |
27713 |
T |
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| Q |
107 |
tcatattatatataaggcccgtaacactctaggaacagcccagattctaacagtcatctttaccttagaaaatacgtaaggcaaatgtgcggtcgtgacg |
206 |
Q |
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| T |
27714 |
tcatattatatctaaagtccgtaaaactctaggaagagccctgattctagcactcatctttaccttagaaaatacgtaaggcaaatgtgcggtcgtgacg |
27813 |
T |
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| Q |
207 |
tcataaaaaatgtgtgcatgtcgtgtttatgccctctcatgccatatagcaccgatgttgaaaaaacagaacgccacattgcgaaagagaagtggaacca |
306 |
Q |
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| T |
27814 |
tcataaaaaatgtgtgcatgtcgtgtttacgccctctcatgccatatagcaccgatgttgaaaaaacagaacgccacattgcgaaagagaagtggaacca |
27913 |
T |
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| Q |
307 |
atcattatacttcttacaacacgacaaaacctaccaaccaaaagcattacaatttagatacatttgatat-aaagtgtattctactattct |
396 |
Q |
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| T |
27914 |
atcattatacttcttacaacacgacaaaacctaccaaccaaaagcattacaatttagatacatttgatataaaaatgtatcctactattct |
28004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 147
Target Start/End: Complemental strand, 8113354 - 8113254
Alignment:
| Q |
48 |
aataaaaacacaacaatgagctaa--atttttatgatgtatgatgtaagaagtcatttttctcatattatatataaggcccgtaacactctaggaacagc |
145 |
Q |
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| T |
8113354 |
aataaaatcacaacaatgagctaacaaattttatgacgtattatgtaatgggtcatttt-ctcatattatgtctaagacccctaaaactctaggaacggc |
8113256 |
T |
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| Q |
146 |
cc |
147 |
Q |
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|| |
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| T |
8113255 |
cc |
8113254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 23601336 - 23601373
Alignment:
| Q |
8 |
atattgctcccacaattcaaaatttctggctccaccac |
45 |
Q |
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| T |
23601336 |
atattgctcccactattcaaaatttctgactccaccac |
23601373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 143
Target Start/End: Original strand, 14904665 - 14904760
Alignment:
| Q |
49 |
ataaaaacacaacaatgagctaa--atttttatgatgtatgatgtaagaagtcatttttctcatattatatataaggcccgtaacactctaggaaca |
143 |
Q |
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| T |
14904665 |
ataaaatcacaacaatgagccaacaaattttatgatgtattatgtaagggg-cttttttctcatattatgcttaaggcccctaaaactctaggaaca |
14904760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 45117713 - 45117804
Alignment:
| Q |
51 |
aaaaacacaacaatgagctaaattt-ttatgatgtatgatgtaagaagtcatttttctcatattatatataaggcccgtaacactctaggaac |
142 |
Q |
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| T |
45117713 |
aaaaacacaacaatgagctaaaaaaattatgatgcattatgtaagg-gccatttttttcatattatgcctaaggcccgtaaaactctaggaac |
45117804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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