View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21093_low_1 (Length: 645)
Name: NF21093_low_1
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21093_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 11 - 625
Target Start/End: Original strand, 26615434 - 26616051
Alignment:
| Q |
11 |
catcatcaaactatataacccaagccacaagtttacctatattaaaacctaagctcgactgttcaaataatatcaagtacaccaacctcaagttccccaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26615434 |
catcatcaaactatataacccaagccacaagtttacctatattaaaacctaagctcgactgttcaaataatatcaagtacaccaacctcaagttccccaa |
26615533 |
T |
|
| Q |
111 |
catttggcccatgccagctagtgtgtgaattgtaacctaactnnnnnnntatcacttgtgtgccgacatgtgtgaaaagattggaaaattatatcattac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26615534 |
catttggcccatgccagctagtgtgtgaattgtaacctaactaaaaaaatatcacttgtgtgccaacatgtgtgaaaagattggaaaattatatcattac |
26615633 |
T |
|
| Q |
211 |
cttggcacttgttgagccactgataaaccaaagaagctcttcaacaacgcctcgccaaaatactctctacaaatcaaatgaagaaaccatgtcaactttt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26615634 |
cttggcacttgttgagccactgataaaccaaagaagctcttcaacaacgcctcgccaaaatactctctacaaatcaaatgaagaaaccatgtcaactttt |
26615733 |
T |
|
| Q |
311 |
ttatcaaaatgtaaacagatattcctctttagtcttctctaataaagattcaaagtagcaaacacaaatgataattacaccaaaataatagaaaaagaaa |
410 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26615734 |
ttatcaatatgtaaacagatattcctctttagtcttctctaataaagattcaaagtagcaaacacaaatgataattacaccaaaataatagaaaaagaaa |
26615833 |
T |
|
| Q |
411 |
aggagcacgcattaagcaaattaatttccacagtagaatggacaaattttaaaccaaaatttacacataccttggttgttaaaagtggaaagcttctacg |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26615834 |
aggagcacgcattaagcaaattaatttccacagtagaatggacaaattttaaaccaaaatttacacataccttggttgttaaaagtggaaagcttctacg |
26615933 |
T |
|
| Q |
511 |
cagattaaatctcatctgtggaattatag---aggaggtcagcatataaatcacagaaactccacaacaaaccaatcaaaatgttaccttggaaccaaat |
607 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26615934 |
cagattaaatctcatctgtggaattatagagtaggaggtcagcatataaatcacagaaactccacaacaaaccaatcaaaatgttaccttggaaccaaat |
26616033 |
T |
|
| Q |
608 |
ttggacaaggtaccagtc |
625 |
Q |
| |
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|||||||||||||||||| |
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| T |
26616034 |
ttggacaaggtaccagtc |
26616051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 206 - 320
Target Start/End: Original strand, 54758905 - 54759019
Alignment:
| Q |
206 |
attaccttggcacttgttgagccactgataaaccaaagaagctcttcaacaacgcctcgccaaaatactctctacaaatcaaatgaagaaaccatgtcaa |
305 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||| | | | ||| |||| |
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| T |
54758905 |
attaccttggcatttgttgagccgctgataaaccaaagaagctcttcaacaacccctcgccaaaatactctctagcaaccaaatgcaaagatcatttcaa |
54759004 |
T |
|
| Q |
306 |
cttttttatcaaaat |
320 |
Q |
| |
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||| ||||||||||| |
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| T |
54759005 |
cttctttatcaaaat |
54759019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 537
Target Start/End: Original strand, 54759139 - 54759201
Alignment:
| Q |
475 |
acataccttggttgttaaaagtggaaagcttctacgcagattaaatctcatctgtggaattat |
537 |
Q |
| |
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||||||||| ||||||| ||| ||||||| ||| |||||||| || ||||||||||||||||| |
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| T |
54759139 |
acataccttagttgttagaagaggaaagcctctgcgcagattgaacctcatctgtggaattat |
54759201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 206 - 320
Target Start/End: Original strand, 5317646 - 5317760
Alignment:
| Q |
206 |
attaccttggcacttgttgagccactgataaaccaaagaagctcttcaacaacgcctcgccaaaatactctctacaaatcaaatgaagaaaccatgtcaa |
305 |
Q |
| |
|
|||||||| ||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||| | | | ||| |||| |
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| T |
5317646 |
attaccttagcatttgttgagccgctgataaaccaaagaagctcttcaacaacccctcgccaaaatactctctagcaaccaaatgcaaagatcatttcaa |
5317745 |
T |
|
| Q |
306 |
cttttttatcaaaat |
320 |
Q |
| |
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||| ||||||||||| |
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| T |
5317746 |
cttctttatcaaaat |
5317760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 537
Target Start/End: Original strand, 5317880 - 5317942
Alignment:
| Q |
475 |
acataccttggttgttaaaagtggaaagcttctacgcagattaaatctcatctgtggaattat |
537 |
Q |
| |
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||||||||| ||||||| ||| ||||||| ||| |||||||| || ||||||||||||||||| |
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| T |
5317880 |
acataccttagttgttagaagaggaaagcctctgcgcagattgaacctcatctgtggaattat |
5317942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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