View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21093_low_10 (Length: 341)
Name: NF21093_low_10
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21093_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 140 - 297
Target Start/End: Complemental strand, 7766542 - 7766384
Alignment:
| Q |
140 |
cacatgatctttcacatttattgttcccgcaaatttggctattttcatattaaggggaagagtggaagcttccaaagcatgaatatttgcctatagattt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
7766542 |
cacatgatctttcacatttattgttcccgcaaatttggctattttcatattaaggggaagagtggaagcttccaaagcatgaatatctgcctgtagattt |
7766443 |
T |
|
| Q |
240 |
taggattaaatatgtaattggc-cccctaaatatactaacattttattttagtccccct |
297 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7766442 |
taggattaaacatgtaattggcccccctaaatatactaacattttattttagtccccct |
7766384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 7766662 - 7766585
Alignment:
| Q |
20 |
agtcccaacaagtaactagggtttttcttttcacgcaacatccagtggtggatatggaaaagcaattaaagtggcgag |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7766662 |
agtcccaacaagtaactagggtttttcttttcacgcaacatccagtggtggatatggaaaagcaattaaagtggcgag |
7766585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 22298015 - 22297964
Alignment:
| Q |
245 |
ttaaatatgtaattgg-ccccctaaatatactaacattttattttagtcccc |
295 |
Q |
| |
|
||||||| |||| ||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
22298015 |
ttaaataagtaaatggtccccctaaatatactaacatttgattttagtcccc |
22297964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 175
Target Start/End: Original strand, 55666564 - 55666594
Alignment:
| Q |
145 |
gatctttcacatttattgttcccgcaaattt |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
55666564 |
gatctttcacatttattgttcccgcaaattt |
55666594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 297
Target Start/End: Original strand, 3555360 - 3555421
Alignment:
| Q |
237 |
ttttaggattaaatatgtaattgg-ccccctaaatatactaacattttattttagtccccct |
297 |
Q |
| |
|
||||||| ||||||| | || ||| |||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
3555360 |
ttttagggttaaataagcaaatggtccccctaaatataccaacatttgattttagtccccct |
3555421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 44941753 - 44941712
Alignment:
| Q |
142 |
catgatctttcacatttattgttcccgcaaatttggctattt |
183 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||||||||||||||| |
|
|
| T |
44941753 |
catgatctttgacatttattattccctcaaatttggctattt |
44941712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 12290231 - 12290175
Alignment:
| Q |
235 |
gattttaggattaaatatgtaattggccccctaaatatactaacattttattttagt |
291 |
Q |
| |
|
||||||||| ||||||| |||| || ||||||||||||| ||||||| |||||||| |
|
|
| T |
12290231 |
gattttagggttaaataagtaaatgatcccctaaatataccaacatttaattttagt |
12290175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 45405136 - 45405100
Alignment:
| Q |
261 |
ccccctaaatatactaacattttattttagtccccct |
297 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
45405136 |
ccccttaaatatactaacatttgattttagtccccct |
45405100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University