View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21093_low_11 (Length: 337)
Name: NF21093_low_11
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21093_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 24446738 - 24446966
Alignment:
| Q |
1 |
gaaaattctgtgctaaatccaatcaatttagctaactttcataaaataactataaaaagtgtaaagaattagaattaaacacatacaattactgaatttc |
100 |
Q |
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| T |
24446738 |
gaaaattctgtgctaaacccaatcaatttagctaactttcacaaaataactatgaaaagtgtaaagaattagaattaaacacatacaattactgaatttc |
24446837 |
T |
|
| Q |
101 |
attgctgaaatatacagagttcactaaaattaacaagtaatattaacaataaagaagtagaattaaaacatatattccttgataaacagtaaaattaaca |
200 |
Q |
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| T |
24446838 |
attgctgaaatatacagagttgactaaaattaacaagtaatattaacaataaagaagtaaaattaaaacatatattccttgataaacagtaaaattaaca |
24446937 |
T |
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| Q |
201 |
tggcgcttgacaaaaacacttcaccaatg |
229 |
Q |
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| T |
24446938 |
tggcgcttgacaaaaacacttcaccaatg |
24446966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 82 - 207
Target Start/End: Complemental strand, 38840177 - 38840051
Alignment:
| Q |
82 |
catacaattactgaatttcattgctgaaatata--cagagttcactaaaattaacaagtaatattaacaataaagaagtagaattaaaacatatattcct |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38840177 |
catacaattactgaatttcattgctgaaatatatacagagttcactaaaattaacaaataatattaacaataaagaagta-aattaaaacatatattcct |
38840079 |
T |
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| Q |
180 |
tgataaacagtaaaattaacatggcgct |
207 |
Q |
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||| ||| |||||||||| |||||||| |
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| T |
38840078 |
tgagaaattgtaaaattaaaatggcgct |
38840051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 82 - 207
Target Start/End: Complemental strand, 12353001 - 12352870
Alignment:
| Q |
82 |
catacaattactgaatttcattgctgaaatata--cagagttcactaaaattaacaagtaatattaacaataaagaagtagaattaaaaca----tatat |
175 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| |
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| T |
12353001 |
catacaattactgaatttcattgctgaaatatatacagagttcactaaaattaacaaataatattaacaataaagaagtaaaattaaaacatacttatat |
12352902 |
T |
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| Q |
176 |
tccttgataaacagtaaaattaacatggcgct |
207 |
Q |
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||||||| ||| |||||| |||| |||||||| |
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| T |
12352901 |
tccttgagaaatagtaaagttaaaatggcgct |
12352870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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