View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21093_low_14 (Length: 324)
Name: NF21093_low_14
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21093_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 31524430 - 31524578
Alignment:
| Q |
17 |
cataggcacacatgtttaatcatttgtattgcaagaacagaaccaaacaacgcatcttaattcgaaatgccaaaggccaaaatgcttctttcaattcaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31524430 |
cataggcacacatgtttaatcatttgtattgcaagaacagaaccaaacgacgcatcttaattcaaaatgccaaaggccaaaatgcttctttcaattcaaa |
31524529 |
T |
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| Q |
117 |
tgatgtcaacaactcttacaaaacaacaacttctacaattgttccactt |
165 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31524530 |
tgatatcaacaactcttacaaaacaacaacttctacaattgttccactt |
31524578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 31524673 - 31524715
Alignment:
| Q |
262 |
cagacgagcgtctgacttctaggtagagtgtgtcattgttccc |
304 |
Q |
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| T |
31524673 |
cagacgggcgtctgacttctaggtagattgtatcattgttccc |
31524715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 33367070 - 33366922
Alignment:
| Q |
17 |
cataggcacacatgtttaatcatttgtattgcaagaacagaaccaaacaacgcatcttaattcgaaatgccaaaggccaaaatgcttctttcaattcaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33367070 |
cataggcacacatgtttaatcatttgtattgcaagaacagaaccaaacgacgcatcttaattcaaaatgccaaaggccaaaatgcttctttcaattcaaa |
33366971 |
T |
|
| Q |
117 |
tgatgtcaacaactcttacaaaacaacaacttctacaattgttccactt |
165 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33366970 |
tgatatcaacaactcttacaaaacaacaacttctacaattgttccactt |
33366922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 304
Target Start/End: Complemental strand, 33366821 - 33366786
Alignment:
| Q |
269 |
gcgtctgacttctaggtagagtgtgtcattgttccc |
304 |
Q |
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|||||||||||||||||||||||| ||||||||||| |
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| T |
33366821 |
gcgtctgacttctaggtagagtgtatcattgttccc |
33366786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 49194388 - 49194536
Alignment:
| Q |
17 |
cataggcacacatgtttaatcatttgtattgcaagaacagaaccaaacaacgcatcttaattcgaaatgccaaaggccaaaatgcttctttcaattcaaa |
116 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
49194388 |
cataggcacacatgtttaatcatttgtattgcaagaacagaaccaaacgacgcatcttaattcaaaatgccaaaggccaaaatgcttctttcaattcaaa |
49194487 |
T |
|
| Q |
117 |
tgatgtcaacaactcttacaaaacaacaacttctacaattgttccactt |
165 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49194488 |
tgatatcaacaactcttacaaaacaacaacttctacaattgttccactt |
49194536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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