View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21093_low_15 (Length: 318)
Name: NF21093_low_15
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21093_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 245633 - 245383
Alignment:
| Q |
18 |
acaagaacatcactaagaaaaatttaaaaaagggatatattctatgtgtgttcttaaactctagtattctatcatacatgacatctacaacctaatagtc |
117 |
Q |
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| T |
245633 |
acaagaacatcactaagaaaaatttaaaaaagggatatattttatgtgtgttcttaaactctaatgttctatcatacatgacatctacaacctaatagtc |
245534 |
T |
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| Q |
118 |
agttgtgacgacgttctatgcgagtttgatctcaaatttcaactctatcttctttccattatatatctatnnnnnnnnnnnnnntagaactagatcaaat |
217 |
Q |
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| T |
245533 |
agttgtgacgacgttctatgcgagtttgatctcaaatttcaactctatcttctttccatt--atatctataaaaaaaataaaaatagaactagatcaaat |
245436 |
T |
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| Q |
218 |
caaataaatatatttatgtaatttctaactatatattaagtgacaacccaatg |
270 |
Q |
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| T |
245435 |
caaataaatatatttatgtaatttctaactatatattaagtgacaacccaatg |
245383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 297
Target Start/End: Complemental strand, 245250 - 245206
Alignment:
| Q |
255 |
aagtgacaacccaatgaaagatactaaaa--ctacatggattcat |
297 |
Q |
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| T |
245250 |
aagtgacaacccaatgaaagatactaaaactctacatggattcat |
245206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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