View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21093_low_16 (Length: 315)
Name: NF21093_low_16
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21093_low_16 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: scaffold0287 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 16238 - 15957
Alignment:
| Q |
19 |
aatttgtgatacatgacatatacccttatgcatnnnnnnnncaagcattcctccacagtctaattaccagcaagcattctttcttttccttgtgacattt |
118 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16238 |
aatttgtgatacatgacatatacccttatgcataaaaaaaacaagcattcctccacagtctaattaccagcaagcattctttcttttccttgtgacattt |
16139 |
T |
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| Q |
119 |
acatgtgattcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttcctttgtcatcccttcagg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16138 |
acatgtgattcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttcctttgtcatcccttcagg |
16039 |
T |
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| Q |
219 |
catttcccaatcaaatgaattaagaaggtttgcaattatcatttccacggtggcgattcccaatggcatgccagggcaaatt |
300 |
Q |
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| T |
16038 |
cgtttcccaatcaaatgaattaagaaggtttgcaattatcatttccaccgtggcgattcccaatggcatgccagggcaaatt |
15957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 3629847 - 3630128
Alignment:
| Q |
19 |
aatttgtgatacatgacatatacccttatgcatnnnnnnnncaagcattcctccacagtctaattaccagcaagcattctttcttttccttgtgacattt |
118 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3629847 |
aatttgtgatacatgacatatacccttatgcataaaaaaaacaagcattcctccacagtctaattaccagcaagcattctttcttttccttgtgacattt |
3629946 |
T |
|
| Q |
119 |
acatgtgattcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttcctttgtcatcccttcagg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3629947 |
acatgtgattcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttcctttgtcatcccttcagg |
3630046 |
T |
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| Q |
219 |
catttcccaatcaaatgaattaagaaggtttgcaattatcatttccacggtggcgattcccaatggcatgccagggcaaatt |
300 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3630047 |
cgtttcccaatcaaatgaattaagaaggtttgcaattatcatttccaccgtggcgattcccaatggcatgccagggcaaatt |
3630128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 112 - 296
Target Start/End: Original strand, 3619564 - 3619748
Alignment:
| Q |
112 |
gacatttacatgtgattcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttcctttgtcatcc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| | |
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| T |
3619564 |
gacatttacatgtgattcttggcaacaaggcaaaggtgattcttcttgtgtctagcaagtcctggcaatccttcagtgtctatatcttcctttgtcatac |
3619663 |
T |
|
| Q |
212 |
cttcaggcatttcccaatcaaatgaattaagaaggtttgcaattatcatttccacggtggcgattcccaatggcatgccagggca |
296 |
Q |
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| T |
3619664 |
cttcaggcatttcccaatcaaaagagttaagaaggtttgcggttatcatttctactgtggcgattcctaatggtatgccagggca |
3619748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 238
Target Start/End: Original strand, 8914258 - 8914368
Alignment:
| Q |
128 |
tcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttcctttgtcatcccttcaggcatttccca |
227 |
Q |
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||||||| |||||||||| | ||||||||||||| || ||||||||| ||| |||||| ||||||||||||||| ||| || || || | |||||| |
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| T |
8914258 |
tcttggctgcaaggcaaagttcattcttcttgtgttgagtgagtcctggccacctttcagtatcaatatcttcctttatcaggccatctggtaattccca |
8914357 |
T |
|
| Q |
228 |
atcaaatgaat |
238 |
Q |
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|||||| |||| |
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| T |
8914358 |
atcaaaggaat |
8914368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 233
Target Start/End: Original strand, 8900353 - 8900458
Alignment:
| Q |
128 |
tcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttcctttgtcatcccttcaggcatttccca |
227 |
Q |
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||||||| |||||||||| | ||||||||||||| || ||||||||| ||| |||||| ||||||||||||||| ||| || || || | |||||| |
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| T |
8900353 |
tcttggctgcaaggcaaagctcattcttcttgtgttgagtgagtcctggccacctttcagtatcaatatcttcctttaccataccatctggtaattccca |
8900452 |
T |
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| Q |
228 |
atcaaa |
233 |
Q |
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|||||| |
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| T |
8900453 |
atcaaa |
8900458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 8999941 - 9000017
Alignment:
| Q |
128 |
tcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttccttt |
204 |
Q |
| |
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||||||||||||||||||| |||||||||||||| || | ||||||||| |||||| ||||||||||||||| |
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| T |
8999941 |
tcttggcaacaaggcaaagaggattcttcttgtgttgagtgatccctggcaacatttcagtatcaatatcttccttt |
9000017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 9014126 - 9014050
Alignment:
| Q |
128 |
tcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttccttt |
204 |
Q |
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||||||||||||||||||| |||||||||||||| || | ||||||||| |||||| |||||||||| |||| |
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| T |
9014126 |
tcttggcaacaaggcaaagaggattcttcttgtgttgagtgatccctggcaacatttcagtatcaatatctttcttt |
9014050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 20073812 - 20073888
Alignment:
| Q |
128 |
tcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttccttt |
204 |
Q |
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||||||| |||||||||| | |||||| ||||| || ||||||||||||| |||||| ||||||||||||||| |
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| T |
20073812 |
tcttggctgcaaggcaaagctcattctttttgtgctgagtgagtcctggcaacctttcagtatcaatatcttccttt |
20073888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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