View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21093_low_17 (Length: 311)
Name: NF21093_low_17
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21093_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 35433687 - 35433397
Alignment:
| Q |
19 |
aaaagagctctatgtccttaaggacataaacttaaagtgttcaa------atcttttatgataatttttggatggatacaaagatttaaacactttattt |
112 |
Q |
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| T |
35433687 |
aaaagagctctatgtccttaaggacataaacttaaagtgttcaacttcaaatcttttatgataatttttggatgaatacgaagatttaaacactttattt |
35433588 |
T |
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| Q |
113 |
aaaagttatgctatttgttccgacaaaatacgcttcgaaaatttcacgaatcactttcatccgtaggatcttttgctggacttcaatcatggttagtaaa |
212 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||| | |||||||||||||||||||||| |||||||||| ||||| |
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| T |
35433587 |
aaaagttatgctatttgttccgacaaaacacgcctcgaaaatttcacgaatcaatttgacccgtaggatcttttgctggactggaatcatggttggtaaa |
35433488 |
T |
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| Q |
213 |
atattaaaagtagggcagggtaataagaaaaatagac--atcatgaatagttcgtgatcaacctggtcgctatagttagtatttccctttg |
301 |
Q |
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| T |
35433487 |
atattaaaagtagggcagggtaataagaaaaatagacatatcatgaataattcgtgatcaacctgatccctatagttagtatttccctttg |
35433397 |
T |
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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 32556219 - 32556137
Alignment:
| Q |
155 |
ttcacgaatcactttcatccgtaggatcttttgctggacttcaatcatggttagtaaaatattaaaagtagggcagggtaata |
237 |
Q |
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||||||||||||| | | ||||| ||| |||||||||||| |||||||| | |||| ||||||||||| ||||||||||||| |
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| T |
32556219 |
ttcacgaatcactgtgagccgtatgattttttgctggactgaaatcatgggtggtaatatattaaaagtggggcagggtaata |
32556137 |
T |
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