View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21093_low_18 (Length: 308)
Name: NF21093_low_18
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21093_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 290
Target Start/End: Complemental strand, 33810384 - 33810104
Alignment:
| Q |
9 |
agcagagatagtagacaaaggcaattcaagtaagtaagcattttatataaaatttaggaaaaattaatcttgtggtcccttaacttaatttggtttatgc |
108 |
Q |
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| T |
33810384 |
agcagagatagtagacaaaggcaattcaagtaagtaagc-ttttatataaaatttaggaaaaattaatcttgtggtcccttaacttaatttggtatatgc |
33810286 |
T |
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| Q |
109 |
agcttgcacatgtgatggaacaatttatggggcgttactggctatgacaggacttgcatgtttatattcatgttattatcgatccaaactaagggcacaa |
208 |
Q |
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| T |
33810285 |
agcttgcacatgtgatggaacaatttatggggcgctactggctgtgactggacttgcatgtttatattcatgttattatcggtccaaactgagggcacaa |
33810186 |
T |
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| Q |
209 |
tatgacttgccagaggcaccttgtatggattgcttagttcatttttgttgcgaaacttgtgctctttatcaggaatatagag |
290 |
Q |
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| T |
33810185 |
tatgacttgccagaggcaccttgtatggattgcttagttcatttttgttgtgaaacttgtgctctttgtcaggaatatagag |
33810104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 97 - 290
Target Start/End: Complemental strand, 33815206 - 33815013
Alignment:
| Q |
97 |
tttggtttatgcagcttgcacatgtgatggaacaatttatggggcgttactggctatgacaggacttgcatgtttatattcatgttattatcgatccaaa |
196 |
Q |
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| T |
33815206 |
tttggtatatgcagcttgcacctgtgatggaacaatttatggggcgctactggctgtgactggacttgcatgtttatattcatgttattatcggtccaaa |
33815107 |
T |
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| Q |
197 |
ctaagggcacaatatgacttgccagaggcaccttgtatggattgcttagttcatttttgttgcgaaacttgtgctctttatcaggaatatagag |
290 |
Q |
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| T |
33815106 |
ctgagggcacaatatgacttgccagaggcaccttgtatggattgcttagttcatttttgttgtgaaacttgtgctctttgtcaggaatatagag |
33815013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 33815612 - 33815525
Alignment:
| Q |
9 |
agcagagatagtagacaaaggcaattcaagtaagtaagcattttatataaaatttaggaaaaattaatcttgtggtcccttaacttaattt |
99 |
Q |
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|||||||||||| || ||||||||||||||||||||||| |||| ||||||||||||| |||||||| ||||| || ||||||||||||| |
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| T |
33815612 |
agcagagatagtggataaaggcaattcaagtaagtaagc-ttttctataaaatttaggcaaaattaa--ttgtgttctcttaacttaattt |
33815525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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