View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21093_low_19 (Length: 302)
Name: NF21093_low_19
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21093_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 14 - 292
Target Start/End: Complemental strand, 22603585 - 22603307
Alignment:
| Q |
14 |
gaaggatataatagaaacaatggataaatataaaatcgctaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaaca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22603585 |
gaaggatataatagaaacaatggataaatataaaatcactaaagaattgtttattgcactgaaacaaaaatcaaaagaaaaatgcatgcaccatggaaca |
22603486 |
T |
|
| Q |
114 |
ttcaggaaaccgctattggtgggttgtttcttcatgacaggagagtaatattaagtatgtgcttataaattactgtaattagcaatataagagatgtcca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22603485 |
ctcaggaaaccgctattggtgggttgtttcttcatgacaggagagcaatattaagtatgtgcttataaatttctgtaattagcaatataagagatgtcca |
22603386 |
T |
|
| Q |
214 |
tttgagttagcaacaagatcataagaaaggatcaagtattccattgcaaaatttaaacatgacgtaccaaaaagtgatg |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22603385 |
tttgagttagcaacaagatcataagaaaggatcaagtattccattgcaaaatttaaacatgacgtaccaaaaagtgatg |
22603307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 14 - 292
Target Start/End: Complemental strand, 45622064 - 45621786
Alignment:
| Q |
14 |
gaaggatataatagaaacaatggataaatataaaatcgctaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaaca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45622064 |
gaaggatataatagaaacaatggataaatataaattcgctaaagagttgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaaca |
45621965 |
T |
|
| Q |
114 |
ttcaggaaaccgctattggtgggttgtttcttcatgacaggagagtaatattaagtatgtgcttataaattactgtaattagcaatataagagatgtcca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45621964 |
ttcaggaaaccgctattggtgggttgtttcttcatgacatgagagcaatattaagtatgtgcttataaattactgtaattagcaatataagagatgtcca |
45621865 |
T |
|
| Q |
214 |
tttgagttagcaacaagatcataagaaaggatcaagtattccattgcaaaatttaaacatgacgtaccaaaaagtgatg |
292 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45621864 |
tttgagttagcaacaagatcataataaatgatcaagtattccattgcaaaatttaaacatgacgtaccaaaaagtgatg |
45621786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 292
Target Start/End: Complemental strand, 20188392 - 20188114
Alignment:
| Q |
14 |
gaaggatataatagaaacaatggataaatataaaatcgctaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaaca |
113 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20188392 |
gaaggatataatagaaacaatgcataaatataaaatcactaaagaattgtttattgcagtgaaactgaaatcaaaagaaaaatgcatgcaccatggaaca |
20188293 |
T |
|
| Q |
114 |
ttcaggaaaccgctattggtgggttgtttcttcatgacaggagagtaatattaagtatgtgcttataaattactgtaattagcaatataagagatgtcca |
213 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20188292 |
ttcaggaaaccgctattggtggggtgtttcttcatgataggagagcaatattaaatacgtgcttataaattactgtaattagcaatataagagatgtcca |
20188193 |
T |
|
| Q |
214 |
tttgagttagcaacaagatcataagaaaggatcaagtattccattgcaaaatttaaacatgacgtaccaaaaagtgatg |
292 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20188192 |
tttgagttagcaacaggatcataagaaaggatcaagtattccattgcaaaatttaaacatgacgtaccaaaaagtgatg |
20188114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 51091705 - 51091591
Alignment:
| Q |
16 |
aggatataatagaaacaatggataaatataaaatcgctaaagaattgtttattgcactgaaactga----aatcaaaagaaaaatgcatgcacc--atgg |
109 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | || |
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|
| T |
51091705 |
aggatataatagaaacaattgatgaatataaaatcactaaagaattgtttattgcactgaaactgaaattaattaaaagaaaaatgcatgcaccttaagg |
51091606 |
T |
|
| Q |
110 |
aacattcaggaaacc |
124 |
Q |
| |
|
|||||||| |||||| |
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|
| T |
51091605 |
aacattcatgaaacc |
51091591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 292
Target Start/End: Original strand, 15214313 - 15214588
Alignment:
| Q |
14 |
gaaggatataatagaaacaatggataaatataaaatcgctaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaaca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15214313 |
gaaggatataatagaaacaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaaca |
15214412 |
T |
|
| Q |
114 |
ttcaggaaaccgctattggtgggttgtttcttcatgacaggagagtaatattaagtatgtgcttataaattactgtaattagcaatataagagatgtcca |
213 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15214413 |
ttcaggaaatcgctattggtgggttatttcttcatgacaggagaacaatattaaatatgtgcttataaattactgtaattagcaatataagagatgtcca |
15214512 |
T |
|
| Q |
214 |
tttgagttagcaacaagatcataagaaaggatcaagtattccattgcaaaatttaaacatgacgtaccaaaaagtgatg |
292 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
15214513 |
tttgagttagcaacatgatcataagaaaggatcaagtattccattg---aatttaaacatgacataccaaaaagtgatg |
15214588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 292
Target Start/End: Original strand, 15253532 - 15253807
Alignment:
| Q |
14 |
gaaggatataatagaaacaatggataaatataaaatcgctaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaaca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15253532 |
gaaggatataatagaaacaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaaca |
15253631 |
T |
|
| Q |
114 |
ttcaggaaaccgctattggtgggttgtttcttcatgacaggagagtaatattaagtatgtgcttataaattactgtaattagcaatataagagatgtcca |
213 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15253632 |
ttcaggaaatcgctattggtgggttatttcttcatgacaggagaacaatattaaatatgtgcttataaattactgtaattagcaatataagagatgtcca |
15253731 |
T |
|
| Q |
214 |
tttgagttagcaacaagatcataagaaaggatcaagtattccattgcaaaatttaaacatgacgtaccaaaaagtgatg |
292 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
15253732 |
tttgagttagcaacatgatcataagaaaggatcaagtattccattg---aatttaaacatgacataccaaaaagtgatg |
15253807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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