View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21093_low_20 (Length: 300)
Name: NF21093_low_20
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21093_low_20 |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 17545562 - 17545263
Alignment:
| Q |
1 |
atctgtaccacaaaccaaggggtccgtggtaatgagaacatgaggagagccagactgggaaaagaactcgcgcacaatgatatccctagtgttctggtcc |
100 |
Q |
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| T |
17545562 |
atctgtaccacaaaccaaggggtctgtggtaatgagaacatgaggagagccagactgggaaaagaactcgcgcacaatgatatccctagtgttctggtcc |
17545463 |
T |
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| Q |
101 |
atgtcactctggatgactgacactttatgatctctgctttgcatcttgtccgtgagccaatccactttgcacctggtatccacaaagacaatacaataag |
200 |
Q |
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| T |
17545462 |
atgtcactctggatgactgacactttatgatctctgctttgcatcttgtccgtgagccaatccactttgcacctggtatccacaaagacaatacaatgag |
17545363 |
T |
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| Q |
201 |
tgatcgatttagctttaacggtcagctcaaagatgtcgcatagtgtctctagcttccactcttccttctcaacatcgacataaaactgcttgataccctc |
300 |
Q |
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| T |
17545362 |
tgatcgatttagctttaacggtcagctcaaagatgtcgcatagtgtctctagcttccactcttccttctcaacatcgacataaaactgcttgataccctc |
17545263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 6e-68; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 6233812 - 6234102
Alignment:
| Q |
1 |
atctgtaccacaaaccaaggggtccgtggtaatgagaacatgaggagagccagactgggaaaagaactcgcgcacaatgatatccctagtgttctggtcc |
100 |
Q |
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| T |
6233812 |
atctgtaccacaaacgagggggtcggtggtaatgagaacttgaggagagccagactcgaaaagaaactcacgttcaatggtatccatagtgttctggtcc |
6233911 |
T |
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| Q |
101 |
atgtcactctggatgactgacactttatgatctctgctttgcatcttgtccgtgagccaatccactttgcacctggtatccacaaagacaatacaataag |
200 |
Q |
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| T |
6233912 |
ctgtcacc----atgaatgaca--taatgatctctgcttcgcatcttgtccgtgagccagtccactttgtcgatagtattcacaaagacgatacaatgag |
6234005 |
T |
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| Q |
201 |
tgatcgattta---gctttaacggtcagctcaaagatgtcgcatagtgtctctagcttccactcttccttctcaacatcgacataaaactgcttgat |
294 |
Q |
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| T |
6234006 |
tgatggatttataagctttaagggtcagctcaaagatgtcgcatagtgtctctagcttccactcttccttgtcaacatccacataaaactgcttgat |
6234102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 6226554 - 6226847
Alignment:
| Q |
1 |
atctgtaccacaaaccaaggggtccgtggtaatgagaacatgaggagagccagactgggaaaagaactcgcgcacaatgatatccctagtgttctggtcc |
100 |
Q |
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||||| |||||||| | |||||| |||||||||||||| |||||||||| |||||||||||| ||||||||| || ||||||||| ||| |||| |
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| T |
6226554 |
atctgcaccacaaagctgggggtcggtggtaatgagaacttgaggagagctagactgggaaaaaaactcgcgcgtaactatatccctaatgtcctgggaa |
6226653 |
T |
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| Q |
101 |
atgtcactctggatgactgacactttatgatctctgctttgcatcttgtccgtgagccaatccactttgcacctggtatccacaaagacaatacaataag |
200 |
Q |
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| | ||||||| |||||||||||||||||||| ||| || |||| ||||||| ||||||||| | |||||| ||||||||| ||||||| || |
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| T |
6226654 |
aaaaacttgaggatgacaaacactttatgatctctgcttcgcaactcgtccatgagccagtccactttgtccatggtattcacaaagacgatacaatgag |
6226753 |
T |
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| Q |
201 |
tgatcgatttagctttaacggtcagctcaaagatgtcgcatagtgtctctagcttccactcttccttctcaacatcgacataaaactgcttgat |
294 |
Q |
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|||| ||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
6226754 |
tgatggatttagctttaagggtcagctcaaatatgtcacatagtgtctctagcttccactcttccttgtcaacatccacataaaactgcttgat |
6226847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 6249384 - 6249493
Alignment:
| Q |
77 |
atgatatccctagtgttctggtccatgtcactctggatgactgacactttatgatctctgctttgcatcttgtccgtgagccaatccactttgcacctgg |
176 |
Q |
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||||||||||||||||||||||||||||||| || || |||| ||| |||||||||||||| ||||||| ||||| ||||| |||||||| | ||||| |
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| T |
6249384 |
atgatatccctagtgttctggtccatgtcaccatgagtggctgagactgtatgatctctgcttcgcatcttatccgtaagccagtccactttccgcctgg |
6249483 |
T |
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| Q |
177 |
tatccacaaa |
186 |
Q |
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||| |||||| |
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| T |
6249484 |
tattcacaaa |
6249493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 300
Target Start/End: Original strand, 6240923 - 6241191
Alignment:
| Q |
14 |
accaaggggtccgtggtaatgagaacatgaggagagccagactgggaaaagaactcgcgcacaatgatatccctagtgttctggtccatgtcactctgga |
113 |
Q |
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||||||||||| ||||||||||||| |||||||| ||||||||| || | || || |||||||||||||||||||||||||||||| || | |
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| T |
6240923 |
accaaggggtcggtggtaatgagaatctgaggagaaccagactggaaa------ttacgtacgatgatatccctagtgttctggtccatgtcatcatgaa |
6241016 |
T |
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| Q |
114 |
tgactgacactttatgatctctgctttgcatcttgtccgtgagccaatccactttgcacctggtatccacaaagacaatacaataagtgatcgatttagc |
213 |
Q |
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|| ||||| ||| || ||||||| |||| |||||| ||||||| |||||||||| | ||||| |||||| ||||| |||| |||||| |||||| |
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| T |
6241017 |
tggtcaacactgtataatatctgcttcgcattttgtccatgagccagtccactttgcgctcggtattcacaaaaacaatgcaatgagtgatgaatttagt |
6241116 |
T |
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| Q |
214 |
tttaacggtcagctcaaagatgtcgcatagtgtctctagcttccactcttccttctcaacatcgacataaaactgcttgataccctc |
300 |
Q |
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|| ||||||| ||| ||||||||| ||||||| ||||| ||||| | |||||||||||||||||||||||| |
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| T |
6241117 |
cgtat------------agatgtcatataatgtctctagtttccacttttcctcgtcaacgttgacataaaactgcttgataccctc |
6241191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 297
Target Start/End: Original strand, 6249530 - 6249592
Alignment:
| Q |
235 |
gtcgcatagtgtctctagcttccactcttccttctcaacatcgacataaaactgcttgatacc |
297 |
Q |
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|||||| | |||||| |||||||| |||||||| || |||| ||||||||||||||||||||| |
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| T |
6249530 |
gtcgcacaatgtctcaagcttccattcttccttatcgacattgacataaaactgcttgatacc |
6249592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 52329231 - 52329173
Alignment:
| Q |
242 |
agtgtctctagcttccactcttccttctcaacatcgacataaaactgcttgataccctc |
300 |
Q |
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||||| || ||||||||||| || |||||||||| ||||||||||||||| |||||||| |
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| T |
52329231 |
agtgtgtccagcttccactcctctttctcaacattgacataaaactgcttaataccctc |
52329173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 42718775 - 42718719
Alignment:
| Q |
244 |
tgtctctagcttccactcttccttctcaacatcgacataaaactgcttgataccctc |
300 |
Q |
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||||||||| |||||||||||||| ||||||| || || ||||||||||||||||| |
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| T |
42718775 |
tgtctctagtttccactcttccttgtcaacattcacgtagaactgcttgataccctc |
42718719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 17533647 - 17533705
Alignment:
| Q |
242 |
agtgtctctagcttccactcttccttctcaacatcgacataaaactgcttgataccctc |
300 |
Q |
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||||| || |||||||| || ||||| ||||||| |||||| ||||||||||||||||| |
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| T |
17533647 |
agtgtgtcaagcttccattcctccttatcaacattgacatagaactgcttgataccctc |
17533705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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