View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21093_low_23 (Length: 281)
Name: NF21093_low_23
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21093_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 11849787 - 11849584
Alignment:
| Q |
18 |
ccttcaaccttaaactttttcactgcaacaattttaccgtctactagcatgcctttgtaaactgttccttgaccaccttttccaagaactctattcttat |
117 |
Q |
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| T |
11849787 |
ccttcaaccttaaactttttcactgcaacaattttaccgtctactagcatgcctttgtaaactgttccttgacctccttttccaagaactctattcttat |
11849688 |
T |
|
| Q |
118 |
tgaagttgtcggtggcnnnnnnnaaatcctttaaggtgaagagagtagttctgtcaatatttacttctcctgaagacattctttgttttaacaacaaacc |
217 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849687 |
tgaagttgtcggtggctttctttagatcctttaaggtgaagagagtagttctgtcaatatttacttctcctgaagacattctttgttttaacaacaaacc |
11849588 |
T |
|
| Q |
218 |
acca |
221 |
Q |
| |
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|||| |
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| T |
11849587 |
acca |
11849584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 11845058 - 11844855
Alignment:
| Q |
18 |
ccttcaaccttaaactttttcactgcaacaattttaccgtctactagcatgcctttgtaaactgttccttgaccaccttttccaagaactctattcttat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11845058 |
ccttcaaccttaaactttttcactgcaacaattttaccgtctactagcatgcctttgtaaactgttccttgacctccttttccaagaactctattcttat |
11844959 |
T |
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| Q |
118 |
tgaagttgtcggtggcnnnnnnnaaatcctttaaggtgaagagagtagttctgtcaatatttacttctcctgaagacattctttgttttaacaacaaacc |
217 |
Q |
| |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11844958 |
tgaagttgtcggtggctttttttagatcctttaaggtgaagagagtagttctgtcaatatttacttctcctgaagacattctttgttttaacaaaaaacc |
11844859 |
T |
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| Q |
218 |
acca |
221 |
Q |
| |
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|||| |
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|
| T |
11844858 |
acca |
11844855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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