View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21093_low_27 (Length: 246)
Name: NF21093_low_27
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21093_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 1140856 - 1140638
Alignment:
| Q |
18 |
cattagataagtgtagattgtggagaaattgaacaatggtatgcaatgttctgaaagtagtacaaaacgttggtttgagaaatcaagcagtgcatttgct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1140856 |
cattagataagtgtagattgtggagaaattgaacaatggtatgcaatgttctgaaagtagtacaaaacgttggtttgagaaatcaagcagtgcatttgct |
1140757 |
T |
|
| Q |
118 |
agtagacgtctttctgcttctatcatgctattttcaccccactttaccttctgcatgaacaataaaaattcatatattttagctttaactagtctatgtg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1140756 |
agtagacgtctttctgcttctatcatgctattttcaccccactttacctcctgcatgaacaataaaaattcatatattttagctttaactagtctatgtg |
1140657 |
T |
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| Q |
218 |
aaaaattcttatagttctt |
236 |
Q |
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||||| ||||||||||||| |
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| T |
1140656 |
aaaaaatcttatagttctt |
1140638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 1137395 - 1137179
Alignment:
| Q |
18 |
cattagataagtgtagattgtggagaaattgaacaatggtatgcaatgttctgaaagtagtacaaaacgttggtttgagaaatcaagcagtgcatttgct |
117 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1137395 |
cattagataagtgtagattgtgaagaaattgaacaatggtatgcaatgttctgaaagtaggacaaaacgttggtttgagaaatcaagcagtgcatttgct |
1137296 |
T |
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| Q |
118 |
agtagacgtctttctgcttctatcatgctattttcaccccactttaccttctgcatgaacaataaaaattcatatattttagctttaactagtctatgtg |
217 |
Q |
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| T |
1137295 |
agtagacgtctttctgcttctatcatgctattttcaccccactttaccttctgcatgaacaataaaaattcatatattttagctttaactagtctatgtg |
1137196 |
T |
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| Q |
218 |
aaaaattcttatagttc |
234 |
Q |
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||||||||||||||||| |
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| T |
1137195 |
aaaaattcttatagttc |
1137179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 31266764 - 31266948
Alignment:
| Q |
18 |
cattagataagtgtagattgtggagaaattgaacaatggtatgcaatgttctgaaagtagtacaaaacgttggtttgagaaatcaagcagtgcatttgct |
117 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31266764 |
cattaggtaagtgtagattgtagagaaattgaacaatggtatgcatgattctgaaagtagtacaaaacgttggtttgagaaatcaagcaatgcatttgct |
31266863 |
T |
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| Q |
118 |
agtagacgtctttctgcttctatcatgctattttcaccccactttaccttctgcatgaacaataaaaattcatatattttagcttt |
203 |
Q |
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| T |
31266864 |
agtaaacgtctttctgcttctatcatgctattctcaccccactttacttcctgcat-aacaaaagaaaatcataaattttggcttt |
31266948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 54474713 - 54474869
Alignment:
| Q |
18 |
cattagataagtgtagattgtggagaaattgaacaatggtatgcaatgttctgaaagtagtacaaaacgttggtttgagaaatcaagcagtgcatttgct |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
54474713 |
cattagataagtgtatattgtggagaaattgaacaatggtatgcatgattctgaaagtagtacaaaacgttggtttgagaaatcgagcaatgcatttgct |
54474812 |
T |
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| Q |
118 |
agtagacgtctttctgcttctatcatgctattttcaccccactttaccttctgcatg |
174 |
Q |
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||||||||| | || || |||||||||||||| |||||||||||||||| ||||||| |
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| T |
54474813 |
agtagacgtttctcagcctctatcatgctattctcaccccactttacctcctgcatg |
54474869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 48323568 - 48323731
Alignment:
| Q |
18 |
cattagataagtgtagattgtggagaaattgaacaatggtatgcaatgttctgaaagtagtacaaaacgttggtttgagaaatcaagcagtgcatttgct |
117 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||| || |||||||||||||||||| | |||||||||||||||||||| |||||||||| |
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| T |
48323568 |
cattagataagtataaattgtggagaaattgaacaatggtatacatgattctgaaagtagtacaaatctttggtttgagaaatcaagcaatgcatttgct |
48323667 |
T |
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| Q |
118 |
agtagacgtctttctgcttctatcatgctattttcaccccactttaccttctgcatgaacaata |
181 |
Q |
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|||||||| || ||||| |||||||||||| | |||||||||||||||| |||||| ||||||| |
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| T |
48323668 |
agtagacgcctctctgcctctatcatgctagtctcaccccactttacctcctgcatcaacaata |
48323731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 395573 - 395619
Alignment:
| Q |
66 |
ttctgaaagtagtacaaaacgttggtttgagaaatcaagcagtgcat |
112 |
Q |
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|||||||||||||| ||||||||||||||| |||||||| ||||||| |
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| T |
395573 |
ttctgaaagtagtataaaacgttggtttgataaatcaagtagtgcat |
395619 |
T |
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