View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21093_low_4 (Length: 455)
Name: NF21093_low_4
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21093_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 230 - 437
Target Start/End: Complemental strand, 4215803 - 4215596
Alignment:
| Q |
230 |
aacataacttatagtaatcaggacaatctatttgaaagaacaaacacatcttatacaaaaacaaacaaccgaacgttttttcagatttgtaaatatcatc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4215803 |
aacataacttatagtaatcaggacaatctatttgaaagaacaaacacatcttatacaaaaacaaacaaccgaacgttttttcagatttgtaaatatcatc |
4215704 |
T |
|
| Q |
330 |
gtctttctttggttgatttcttgttcctgcaccctcagcacaataaccattcaaaattgcaacaacaaagagagccaaaacaaatgaagcagtgattttt |
429 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4215703 |
gtctttctttggttgattacttgtttctgcaccctcagcacaataaccattcaaaattgcaacaacaaagagagccaaaacaaatgaagcagtgattttt |
4215604 |
T |
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| Q |
430 |
gccatagt |
437 |
Q |
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|||||||| |
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| T |
4215603 |
gccatagt |
4215596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 4216077 - 4215953
Alignment:
| Q |
13 |
aaaataatacatatataaatgtaaagatatcaatggtacacaaactatgcatgcatggccacaatcttcaatcatggaaggatttgagctgttggcctat |
112 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4216077 |
aaaataatacatatataaatgtatagatatcaatggtacacaaactatgcatgcatggccacaatcttcaatcatggaaggatttgagctgttggactat |
4215978 |
T |
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| Q |
113 |
caccaccttcagctgggggattacc |
137 |
Q |
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||||||||||||||||||||||||| |
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| T |
4215977 |
caccaccttcagctgggggattacc |
4215953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 360 - 437
Target Start/End: Complemental strand, 4218217 - 4218140
Alignment:
| Q |
360 |
accctcagcacaataaccattcaaaattgcaacaacaaagagagccaaaacaaatgaagcagtgatttttgccatagt |
437 |
Q |
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||||||||||| ||| |||||||||||||||||||||| |||| | ||||||| ||||||| || ||||||||||||| |
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| T |
4218217 |
accctcagcactatagccattcaaaattgcaacaacaaggagaactaaaacaattgaagcaatggtttttgccatagt |
4218140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 437
Target Start/End: Complemental strand, 34357185 - 34357101
Alignment:
| Q |
353 |
ttcctgcaccctcagcacaataaccattcaaaattgcaacaacaaagagagccaaaacaaatgaagcagtgatttttgccatagt |
437 |
Q |
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|||||||||||||||||| ||| ||||||| ||||||||||| | || | | | ||||| ||||||| || ||||||||||||| |
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| T |
34357185 |
ttcctgcaccctcagcaccatagccattcagcattgcaacaactaggaaaactagaacaagtgaagcaatggtttttgccatagt |
34357101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 437
Target Start/End: Complemental strand, 5398630 - 5398546
Alignment:
| Q |
353 |
ttcctgcaccctcagcacaataaccattcaaaattgcaacaacaaagagagccaaaacaaatgaagcagtgatttttgccatagt |
437 |
Q |
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|||||||||||||||||| ||| ||||||||||| || |||||| |||| ||||||||| |||||||||| |||||||||||| |
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| T |
5398630 |
ttcctgcaccctcagcactatagccattcaaaatcgccgcaacaaggagaaccaaaacaagtgaagcagtggattttgccatagt |
5398546 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 41804466 - 41804391
Alignment:
| Q |
307 |
ttttcagatttgtaaatatcatcgtctttctttggttgatttcttgttcctgcaccctcagcacaataaccattca |
382 |
Q |
| |
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|||| ||||||||||||| |||| |||||||||||| |||| | | ||||| || |||||||| ||||||||||| |
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| T |
41804466 |
ttttgagatttgtaaataccatcatctttctttggtggattacctcttcctccatcctcagcattataaccattca |
41804391 |
T |
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